Browse Element(s) Details


Os.24931.1.S1_at

Description gb:NM_196578.1
DB_XREF= gi:37534515
TID=Os.24931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24931 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative speckle-type protein (OSJNBa0072A12.18), mRNA.
PROD=putative speckle-type protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2902011/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28960NANA10+14771388..14771741hypothetical protein
LOC_Os10g28970Os.27238.1.S1_at11/1110+14772867..14774601BTB/POZ domain containing protein, expressed
LOC_Os10g28980OsAffx.18434.1.S1_at11/1110+14777309..14778351BTB/POZ domain containing protein, expressed
LOC_Os10g28990NANA10+14781122..14786814transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29000NANA10+14787559..14787819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29010NANA10+14789248..14792157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29020Os.24931.1.S1_at11/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.1.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29020Os.46854.2.S1_x_at1/1110+14794995..14796062MATH domain containing protein
LOC_Os10g29040Os.43567.1.S1_x_at1/1110+14803088..14806229hypothetical protein
LOC_Os10g29050Os.46854.1.S1_x_at11/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29050Os.46854.2.S1_x_at8/1110+14809052..14810752BTB/POZ domain containing protein, expressed
LOC_Os10g29060OsAffx.20328.1.S1_x_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29060OsAffx.20328.1.S1_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29070OsAffx.30515.1.S1_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.1.S1_x_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.4.S1_x_at6/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.2.S1_x_at3/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_x_at2/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_at1/1110+14814315..14816645hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24931.1.S1_at--606--1051Chr10:14795337..14795361 (25 bp)
AGGGTGGTCAACTTCTCGGAGGAGA
LOC_Os10g29020
Os.24931.1.S1_at--908--991Chr10:14795442..14795466 (25 bp)
AGGATAGACGTTTCTGTTATTGCAG
LOC_Os10g29020
Os.24931.1.S1_at--460--6791Chr10:14795457..14795481 (25 bp)
GTTATTGCAGATTTCCACGAGGAGG
LOC_Os10g29020
Os.24931.1.S1_at--261--5131Chr10:14795545..14795569 (25 bp)
GCAAACAAGGCGTGGATGTCGAATT
LOC_Os10g29020
Os.24931.1.S1_at--724--10671Chr10:14795701..14795721 (21 bp)
TTCCAGGTAGAAGTGTTTGCGGCGA
LOC_Os10g29020
Os.24931.1.S1_at--394--1111Chr10:14795708..14795732 (25 bp)
AGTGTTTGCGGCGATGCTTACTTTC
LOC_Os10g29020
Os.24931.1.S1_at--136--1251Chr10:14795851..14795875 (25 bp)
AGTTGTCCAAGCACATTGACGCAGG
LOC_Os10g29020
Os.24931.1.S1_at--717--3231Chr10:14795858..14795882 (25 bp)
CAAGCACATTGACGCAGGCTCCGTG
LOC_Os10g29020
Os.24931.1.S1_at--1159--891Chr10:14795873..14795897 (25 bp)
AGGCTCCGTGGCGAACATTTTGGCA
LOC_Os10g29020
Os.24931.1.S1_at--655--1791Chr10:14795985..14796009 (25 bp)
ACTGATGGGTTTCGGTACTTAATTG
LOC_Os10g29020
Os.24931.1.S1_at--960--7011Chr10:14795999..14796023 (25 bp)
GTACTTAATTGGTAGCTGCCCAGGT
LOC_Os10g29020
Target Sequence 
AGGGTGGTCAACTTCTCGGAGGAGAGGAGTTGGGGTTATAGTGAATTCATGAAAAGGGGATCTTTGGAGAAATCAGAGTA
TCTCAAGGATGATTGTTTCAAGATCAGGATAGACGTTTCTGTTATTGCAGATTTCCACGAGGAGGAGACGCCGCTCATCG
TGGTGCCGCCGTCAGACATGCACCGGCAATTTGGTGATCTTCTGCTGAGCAAACAAGGCGTGGATGTCGAATTCCAGGTA
GAAGTGTTTGCGGCGATGCTTACTTTCATTTACACAGATGCATTGCCTGAGATGAAGCAGCAAGAAGAAGCTGCAATGGC
TCAGCATTTGCTTGTCGCGGCTGACAGGTATAATCTGGAGAGGATGAAGCTGATTTGTGAAGATAAGTTGTCCAAGCACA
TTGACGCAGGCTCCGTGGCGAACATTTTGGCACTAGCTGAGCAGCACAGTTGCCACACGCTTAAGGAAGCATGCTTGGAG
TTCCTCAGGTCATCAAGATCTCTGAAGGCAGTCGTGGAAACTGATGGGTTTCGGTACTTAATTGGTAGCTGCCCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis