Browse Element(s) Details


Os.25029.1.S1_at

Description gb:AK067090.1
DB_XREF= gi:32977108
TID=Os.25029.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095M05, full insert sequence.
FL= gb:AK104200.1 gb:AK104368.1 gb:AK067090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4905011/11Urease accessory protein ureG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25029.1.S1_at--1122--8011Chr05:28043951..28043970 (20 bp)
GGAGGAGATAACTTGGCTGCCAACT
LOC_Os05g49050
Os.25029.1.S1_at--325--5651Chr05:28044208..28044232 (25 bp)
GACAGACCTTGCACCAGCAGTTGGA
LOC_Os05g49050
Os.25029.1.S1_at--256--5031Chr05:28044224..28044248 (25 bp)
GCAGTTGGAGCTGACCTGGCTGTAA
LOC_Os05g49050
Os.25029.1.S1_at--137--8991Chr05:28044454..28044478 (25 bp)
TGAACCACATCCTGCAAGCTTGGGA
LOC_Os05g49050
Os.25029.1.S1_at--712--2211Chr05:28044493..28044517 (25 bp)
ACAAGCGTCGATAGCCTGCAGGATT
LOC_Os05g49050
Os.25029.1.S1_at--913--4131Chr05:28044539..28044563 (25 bp)
CGCTCGCGCGTGTAATCATGTACTA
LOC_Os05g49050
Os.25029.1.S1_at--648--1992Chr05:28044563..28044587 (25 bp)
ACTCCAGTATTTCTGCTTTCCTGAA
LOC_Os05g49050
Os.25029.1.S1_at--23--5231Chr05:28044585..28044609 (25 bp)
GAATAAACTGCATCTTTTGGTGGCT
LOC_Os05g49050
Os.25029.1.S1_at--579--1291Chr05:28044623..28044647 (25 bp)
AGATGCTAGCATACAAGCCTCCGAG
LOC_Os05g49050
Os.25029.1.S1_at--96--2671Chr05:28044637..28044661 (25 bp)
AAGCCTCCGAGACTTGTCTAGCTGA
LOC_Os05g49050
Os.25029.1.S1_at--83--1151Chr05:28044663..28044687 (25 bp)
AGTCGAGTCCATAATCTAGTTCTGA
LOC_Os05g49050
Target Sequence 
GGAGGAGATAACTTGGCTGCCAACTTCAGCAGGGAACTGGCAGACTACATAATCTACATCATCGATGTTTCTGGTGGGGA
CAAAATACCAAGAAAAGGTGGCCCTGGGATAACCCAAGCAGATCTTTTGATAATAAACAAGACAGACCTTGCACCAGCAG
TTGGAGCTGACCTGGCTGTAATGGAACGAGATGCGCTTCGCATGCGGGAAGGAGGGCCTTTTGTCTTTGCACAGGTGAAA
CATGGAGTCGGCGTGGAGGAAATTGTGAACCACATCCTGCAAGCTTGGGAGATCGCCACCGGCAACAAGCGTCGATAGCC
TGCAGGATTCTTGGGCACGAGATGTTGTTGCGCTCGCGCGTGTAATCATGTACTACTCCAGTATTTCTGCTTTCCTGAAT
AAACTGCATCTTTTGGTGGCTCGGTGTTGCTGAAAGATGCTAGCATACAAGCCTCCGAGACTTGTCTAGCTGACAGTCGA
GTCCATAATCTAGTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis