Browse Element(s) Details


Os.25062.1.A1_a_at

Description gb:AK120641.1
DB_XREF= gi:37990264
TID=Os.25062.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.25062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0007F06.23 (P0007F06.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154E16, full insert sequence.
FL= gb:AK120641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4830011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25062.1.A1_a_at--474--2391Chr01:28006083..28006547 (25 bp)
AAACTGTGAAGAGTGCTGCTGCCCA
LOC_Os01g48300
Os.25062.1.A1_a_at--92--2771Chr01:28006055..28006079 (25 bp)
AAGACTGCTTATTCCAGTGGCACTT
LOC_Os01g48300
Os.25062.1.A1_a_at--995--9071Chr01:28006050..28006074 (25 bp)
TGCTTATTCCAGTGGCACTTGTGAT
LOC_Os01g48300
Os.25062.1.A1_a_at--839--3311Chr01:28006035..28006059 (25 bp)
CACTTGTGATGATGTATAACCGATG
LOC_Os01g48300
Os.25062.1.A1_a_at--661--1231Chr01:28005896..28005920 (25 bp)
AGTTCCAGATTATGGCTTCATGCAC
LOC_Os01g48300
Os.25062.1.A1_a_at--781--8291Chr01:28005883..28005907 (25 bp)
GGCTTCATGCACCTGGAATTGATAC
LOC_Os01g48300
Os.25062.1.A1_a_at--827--3911Chr01:28005871..28005895 (25 bp)
CTGGAATTGATACCCATGCTTGTTG
LOC_Os01g48300
Os.25062.1.A1_a_at--881--631Chr01:28005856..28005880 (25 bp)
ATGCTTGTTGGGTTTTTCACCTACA
LOC_Os01g48300
Os.25062.1.A1_a_at--746--7671Chr01:28005847..28005871 (25 bp)
GGGTTTTTCACCTACAAGATTGCAA
LOC_Os01g48300
Os.25062.1.A1_a_at--331--10751Chr01:28005828..28005852 (25 bp)
TTGCAACATTTGCTCAGGCAATTCA
LOC_Os01g48300
Os.25062.1.A1_a_at--1025--8211Chr01:28005812..28005836 (25 bp)
GGCAATTCAAGAATCTATACCTGCA
LOC_Os01g48300
Target Sequence 
AAACTGTGAAGAGTGCTGCTGCCCAACCAAGACTGCTTATTCCAGTGGCACTTGTGATGATGTATAACCGATGGAATGAG
ATTTTAGTTCCAGATTATGGCTTCATGCACCTGGAATTGATACCCATGCTTGTTGGGTTTTTCACCTACAAGATTGCAAC
ATTTGCTCAGGCAATTCAAGAATCTATACCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25062.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis