Browse Element(s) Details


Os.25091.1.A1_at

Description gb:AK099579.1
DB_XREF= gi:32984788
TID=Os.25091.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039D24, full insert sequence.
FL= gb:AK073908.1 gb:AK099579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1542011/11Pre-mRNA splicing factor cwc22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15390OsAffx.31752.1.S1_at11/1112+8785203..8785537hypothetical protein
LOC_Os12g15400Os.53787.1.S1_at11/1112+8789746..8794641Esterase, putative, expressed
LOC_Os12g15410OsAffx.7603.1.S1_at11/1112+8795759..8796070hypothetical protein
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15430OsAffx.30564.2.S1_s_at4/1112+8811879..8812148hypothetical protein
LOC_Os12g15430OsAffx.30564.1.S1_s_at2/1112+8811879..8812148hypothetical protein
LOC_Os12g15440OsAffx.31753.4.S1_s_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15440OsAffx.31753.4.S1_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein
LOC_Os12g15460Os.51992.1.S1_at4/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15460Os.56227.1.S1_s_at2/1112+8821214..8824514pentatricopeptide, putative, expressed
LOC_Os12g15470Os.3451.1.S1_at11/1112+8826944..8832027Serine carboxypeptidase I precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25091.1.A1_at--27--8691Chr12:8803868..8803892 (25 bp)
TGTGCATCATGCTTCTCGAGTGTTG
LOC_Os12g15420
Os.25091.1.A1_at--797--7111Chr12:8803895..8803919 (25 bp)
GTCAGGAGAGAACTTATCTTCGATA
LOC_Os12g15420
Os.25091.1.A1_at--752--10231Chr12:8803928..8803952 (25 bp)
TATTGGGCCAACGATTTTGCATGAT
LOC_Os12g15420
Os.25091.1.A1_at--243--10411Chr12:8803986..8804010 (25 bp)
TTTTGTGCAGCAGTATTCCATGATA
LOC_Os12g15420
Os.25091.1.A1_at--354--3131Chr12:8804048..8804072 (25 bp)
AATTTTTTGCACATCTGTTGGGTAC
LOC_Os12g15420
Os.25091.1.A1_at--1060--8811Chr12:8804063..8804087 (25 bp)
TGTTGGGTACTGATGCACTTCCTTG
LOC_Os12g15420
Os.25091.1.A1_at--623--10851Chr12:8804085..8804109 (25 bp)
TTGGCACGTTTTGGCCTACATCAGA
LOC_Os12g15420
Os.25091.1.A1_at--340--5631Chr12:8804122..8804146 (25 bp)
GACACAACGTCTTCATCTCGAATTT
LOC_Os12g15420
Os.25091.1.A1_at--826--6631Chr12:8804258..8804282 (25 bp)
GTTGTCTGAACATCTTGGTATTCGT
LOC_Os12g15420
Os.25091.1.A1_at--169--6391Chr12:8804304..8804328 (25 bp)
GATCCCAACATGCAAGATTCATTTG
LOC_Os12g15420
Os.25091.1.A1_at--107--5391Chr12:8804432..8804456 (25 bp)
GAAGAATATGCCTCGACTGATAATG
LOC_Os12g15420
Target Sequence 
TGTGCATCATGCTTCTCGAGTGTTGCAGTCAGGAGAGAACTTATCTTCGATATTATGGATTATTGGGCCAACGATTTTGC
ATGATTAACAAAGTTTACCAGGAGAACTTTGAGAAGTGTTTTGTGCAGCAGTATTCCATGATACATCGTCTTGAAACAAA
TAAGCTAAGGAATGTTGCTAAATTTTTTGCACATCTGTTGGGTACTGATGCACTTCCTTGGCACGTTTTGGCCTACATCA
GATTGACTGAGGAGGACACAACGTCTTCATCTCGAATTTTCATTAAAATACTCTTCCAGGAGTTGTCTGAACATCTTGGT
ATTCGTCTACTCAACGAGAAACTGAATGATCCCAACATGCAAGATTCATTTGATTCAATATTCCCAAAGGATCATCCAAA
GAATACAAGGTTCTCCATAAATTTTTTCACCTCCATTGGTCTTGGGGGTATCACAGAGACCCTGAGAGAGTACTTGAAGA
ATATGCCTCGACTGATAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25091.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis