Browse Element(s) Details


Os.25117.1.A1_at

Description gb:AK120465.1
DB_XREF= gi:37990088
TID=Os.25117.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108I08, full insert sequence.
FL= gb:AK120465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0789011/11expressed protein
LOC_Os05g459001/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25117.1.A1_at--958--7771Chr01:3815305..3815329 (25 bp)
GGTGCAGGGCACACCAGGTGCAACA
LOC_Os01g07890
Os.25117.1.A1_at--1099--2112Chr05:26515442..26515469 (25 bp)
ACAGGATCCTCCTTCACCCAAGGTT
LOC_Os05g45900
Os.25117.1.A1_at--376--2731Chr01:3815159..3815183 (25 bp)
AAGAAGGTTCTAGCCTTTTGTGCTC
LOC_Os01g07890
Os.25117.1.A1_at--1019--1671Chr01:3815148..3815172 (25 bp)
AGCCTTTTGTGCTCTTCTCAACTAT
LOC_Os01g07890
Os.25117.1.A1_at--669--10551Chr01:3815098..3815122 (25 bp)
TTCTTTGTGGCTTTGTAGTCAGGTC
LOC_Os01g07890
Os.25117.1.A1_at--918--6931Chr01:3815084..3815108 (25 bp)
GTAGTCAGGTCCATCATGTATAGAT
LOC_Os01g07890
Os.25117.1.A1_at--353--9571Chr01:3815020..3815044 (25 bp)
TCTTCTTTTTATGCTACTGTTCTGT
LOC_Os01g07890
Os.25117.1.A1_at--288--6851Chr01:3814981..3815005 (25 bp)
GTTTCCCTCTTGTTAGCTCAACACT
LOC_Os01g07890
Os.25117.1.A1_at--810--4831Chr01:3814966..3814990 (25 bp)
GCTCAACACTAGTTAGCAGCTGTAT
LOC_Os01g07890
Os.25117.1.A1_at--885--6071Chr01:3814905..3814929 (25 bp)
GAGTATGTGCATATCGTTGTATCAT
LOC_Os01g07890
Os.25117.1.A1_at--845--6891Chr01:3814887..3814911 (25 bp)
GTATCATATGTATAAGCCCTTTGTA
LOC_Os01g07890
Target Sequence 
GGTGCAGGGCACACCAGGTGCAACAACAGCCAGGCGTTCCATACTCGCCGTNTGCCCCCAGCACAGGATCCTCCTTCACC
CAAGGTTCCNGGATGCATNTTCTGTGGAATTTTTAGGAAGCCGGTNCTTTNAGAGCCATNTAAACCAAGAAGGTTCTAGC
CTTTTGTGCTCTTCTCAACTATCTGTGCAGAGNTATCAGTTTCTTTTTTCTTTGTGGCTTTGTAGTCAGGTCCATCATGT
ATAGATGTAAGTAGTAAGTCATATAGTTGCANTTGNTGTNAGCTTTCTTCTTTTTATGCTACTGTTCTGTTTTTTTTNNN
TTTACTGGTTTCCCTCTTGTTAGCTCAACACTAGTTAGCAGCTGTATTCTAGAATNCCCGCCTCTGCCATCATGTACNTN
ATAGAGTATGTGCATATCGTTGTATCATATGTATAAGCCCTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25117.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis