Browse Element(s) Details


Os.25122.1.S1_at

Description gb:AK058736.1
DB_XREF= gi:32968754
TID=Os.25122.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G03, full insert sequence.
FL= gb:AK071655.1 gb:AK058736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2158010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21507NANA6+12420569..12421912transposon protein, putative, Pong sub-class
LOC_Os06g21516NANA6+12422324..12424494transposon protein, putative, Pong sub-class
LOC_Os06g21530Os.2106.1.S2_at2/116+12425185..12425832expressed protein
LOC_Os06g21540OsAffx.27753.1.S1_at11/116+12429001..12429372inhibitor I family protein
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed
LOC_Os06g21580Os.25122.1.S1_at10/116+12445398..12447248expressed protein
LOC_Os06g21590Os.12713.1.S1_at11/116+12451674..12453198Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
LOC_Os06g21600Os.9272.1.S1_at11/116+12455787..12461589Uncharacterized ACR, YdiU/UPF0061 family protein, expressed
LOC_Os06g21610OsAffx.29313.1.S1_at1/116+12463880..12469800transposon protein, putative, Mutator sub-class
LOC_Os06g21620OsAffx.15539.1.S1_at10/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.23402.1.A1_at7/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.53962.1.S1_at1/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25122.1.S1_at--438--1851Chr06:12445936..12445960 (25 bp)
ACGACGGTGATGCTGACTACCAACA
LOC_Os06g21580
Os.25122.1.S1_at--859--6171Chr06:12445790..12445814 (25 bp)
GAGGAGAACAGCTCAAGCACCCGGT
LOC_Os06g21580
Os.25122.1.S1_at--839--2711Chr06:12445776..12445800 (25 bp)
AAGCACCCGGTCCAGCAACGATGAA
LOC_Os06g21580
Os.25122.1.S1_at--670--3251Chr06:12445761..12445785 (25 bp)
CAACGATGAATCCACCAGGTCCAAT
LOC_Os06g21580
Os.25122.1.S1_at--694--1031Chr06:12445745..12445769 (25 bp)
AGGTCCAATGGCTTCCGGCAGAATG
LOC_Os06g21580
Os.25122.1.S1_at--120--10551Chr06:12445636..12445660 (25 bp)
TTCATCAGGGATTGGTTCTTGGGTT
LOC_Os06g21580
Os.25122.1.S1_at--377--5171Chr06:12445597..12445621 (25 bp)
GCAAGCTGCTCTTCAGTTTTGTCAT
LOC_Os06g21580
Os.25122.1.S1_at--1117--10511Chr06:12445571..12445595 (25 bp)
TTCAGATTCGGCAAGTTTTCCTTCA
LOC_Os06g21580
Os.25122.1.S1_at--50--9631Chr06:12445538..12445562 (25 bp)
TCATGTTCATGTTTGCTAGGCACCA
LOC_Os06g21580
Os.25122.1.S1_at--818--2531Chr06:12445302..12445326 (25 bp)
AACTAGCATCGGCTTATGGTACTAC
NONE
Os.25122.1.S1_at--1122--291Chr06:12445414..12445438 (25 bp)
ATAGCTAGCATCACCAATCTTGTTG
LOC_Os06g21580
Target Sequence 
ACGACGGTGATGCTGACTACCAACAAGGCGAAGGAGAAGACGGCGGTGCGAAGCCGAAGGTGTCAAGAACGGAGAAGAGC
TCTGCAGGGAAGGGCAACAAGAGGAACAGGCTGCCCAAGGAGGAAGAAAGCTCAAACCTTGACCTTGAGGAGAACAGCTC
AAGCACCCGGTCCAGCAACGATGAATCCACCAGGTCCAATGGCTTCCGGCAGAATGGCAGCCGGCGTAAGAGCACGCCGC
GGCGAGCCGCGGAGGCGGGGATATAGCTTGGAAACTTTGGAATNGGGTGGGGAGGACAGTTTCATCAGGGATTGGTTCTT
GGGTTATATCATCAGTTAGGCAAGCTGCTCTTCAGTTTTGTCATCTTCAGATTCGGCAAGTTTTCCTTCAAAATTTTGTC
ATGTTCATGTTTGCTAGGCACCAACATGAATGTAATGTAAACATATACTAATCCGCGAGACATCGGAGTTTNTGCTTCTG
GTGATGAAAATTGTATGAACTAGCATCGGCTTATGGTACTACTATAGCTAGCATCACCAATCTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis