Browse Element(s) Details


Os.25128.1.S1_at

Description gb:AK069748.1
DB_XREF= gi:32979772
TID=Os.25128.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.25128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027D15, full insert sequence.
FL= gb:AK069748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0981011/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09760OsAffx.2558.1.S1_at11/112+5033329..5034289expressed protein
LOC_Os02g09760OsAffx.2558.1.S1_s_at10/112+5033329..5034289expressed protein
LOC_Os02g09770Os.27546.1.A1_at11/112+5038908..5043308expressed protein
LOC_Os02g09780Os.57154.1.S1_at11/112+5045332..5047098expressed protein
LOC_Os02g09790OsAffx.24178.1.S1_at11/112+5048653..5051394NB-ARC domain containing protein, expressed
LOC_Os02g09800OsAffx.15994.2.S1_at11/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09800OsAffx.15994.1.S1_x_at2/112+5054306..5058036pentatricopeptide, putative
LOC_Os02g09810Os.25128.1.S1_at11/112+5058734..5061962amino acid transporter family protein, putative, expressed
LOC_Os02g09820Os.52048.1.S1_at11/112+5063134..5066606Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g09830OsAffx.11963.1.S1_at11/112+5067202..5068039bZIP transcription factor family protein, expressed
LOC_Os02g09840Os.20243.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09840OsAffx.11964.1.S1_at11/112+5071340..5075444calcium-binding EF hand family protein, putative, expressed
LOC_Os02g09850Os.51629.1.S1_at10/112+5079074..5079709expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25128.1.S1_at--852--8631Chr02:5059370..5059394 (25 bp)
TGGGACGCGTTCCAATTCACCGGTG
LOC_Os02g09810
Os.25128.1.S1_at--700--2151Chr02:5059343..5059367 (25 bp)
ACAGCTGCTGTTCTTATCGGTTTTA
LOC_Os02g09810
Os.25128.1.S1_at--1047--491Chr02:5059328..5059352 (25 bp)
ATCGGTTTTATCTTTCCTGCCATGA
LOC_Os02g09810
Os.25128.1.S1_at--331--2651Chr02:5059171..5059195 (25 bp)
AAGCGCGACAAGATTTTGGCCTTAA
LOC_Os02g09810
Os.25128.1.S1_at--1131--8451Chr02:5059155..5059179 (25 bp)
TGGCCTTAACCATGATTGTGCTTGC
LOC_Os02g09810
Os.25128.1.S1_at--208--731Chr02:5059144..5059168 (25 bp)
ATGATTGTGCTTGCGGTGCTCTCAA
LOC_Os02g09810
Os.25128.1.S1_at--1063--7311Chr02:5059129..5059153 (25 bp)
GTGCTCTCAAATTCTGTGGCTCTAT
LOC_Os02g09810
Os.25128.1.S1_at--59--6231Chr02:5059066..5059090 (25 bp)
GAGGCCTAAAACTCCATACTTCGAG
LOC_Os02g09810
Os.25128.1.S1_at--462--5191Chr02:5058979..5059003 (25 bp)
GCAATGTGATTTTCGGTGGTAGCCA
LOC_Os02g09810
Os.25128.1.S1_at--772--4751Chr02:5058917..5058941 (25 bp)
GCTGCATTTGTCTAGTTTCCTGAAC
LOC_Os02g09810
Os.25128.1.S1_at--324--3951Chr02:5058841..5058865 (25 bp)
CGGTTGTTTGTATCTATTCCGCCAA
LOC_Os02g09810
Target Sequence 
TGGGACGCGTTCCAATTCACCGGTGCCACAGCTGCTGTTCTTATCGGTTTTATCTTTCCTGCCATGATCATACTCAGAGA
TCCTTATGGAATTGCAACCAAGCGCGACAAGATTTTGGCCTTAACCATGATTGTGCTTGCGGTGCTCTCAAATTCTGTGG
CTCTATACAGCGATGCACTGAACATCATCTTTCACAGGAAAGTGGAGGCCTAAAACTCCATACTTCGAGCGACAAAGTGG
AATGTACAGTTAGAATGATTTGGTGAGTTTAAATTAGTAATACCCAGCAAAGCAATGTGATTTTCGGTGGTAGCCATTGA
TTTTTATTCTGGACACCTGAAAGGATTTGATTTGCTGCATTTGTCTAGTTTCCTGAACATAAGCTGGTTCAACATTTAGA
AGAGCCACTTGTGAATTGTGATATGGTTGCGGTTGTTTGTATCTATTCCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis