Browse Element(s) Details


Os.25152.1.S1_at

Description gb:AK109481.1
DB_XREF= gi:32994690
TID=Os.25152.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B01, full insert sequence.
FL= gb:AK109481.1 gb:AK102395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1016011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10130Os.17046.1.S1_at11/112+5297665..5306435tubulin-specific chaperone C, putative, expressed
LOC_Os02g10140OsAffx.24182.1.S1_at11/112+5315119..5318064Transcription factor HBP-1b, putative, expressed
LOC_Os02g10150OsAffx.2562.1.S1_at11/112+5321781..5322421hypothetical protein
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25152.1.S1_at--119--4411Chr02:5325505..5325529 (25 bp)
GCCACAGCTTGGGATGCATTGAGGA
LOC_Os02g10160
Os.25152.1.S1_at--1051--1291Chr02:5325479..5325503 (25 bp)
AGATGCAGCAACATTGGCCCAAGAC
LOC_Os02g10160
Os.25152.1.S1_at--725--8391Chr02:5325464..5325488 (25 bp)
GGCCCAAGACGTAACTTCTTTGACA
LOC_Os02g10160
Os.25152.1.S1_at--10--6031Chr02:5325394..5325418 (25 bp)
GAGAGGTTGCGATCAGTGCTGTCTT
LOC_Os02g10160
Os.25152.1.S1_at--820--10751Chr02:5325370..5325394 (25 bp)
TTGACTGACGTCACTCGATTTCCAG
LOC_Os02g10160
Os.25152.1.S1_at--700--3491Chr02:5325331..5325355 (25 bp)
CAGGCTGTCATTTTTGTTGGTGCAA
LOC_Os02g10160
Os.25152.1.S1_at--709--10851Chr02:5324949..5325339 (25 bp)
TTGGTGCAACGGATGACGGCTACAT
LOC_Os02g10160
Os.25152.1.S1_at--225--4851Chr02:5324931..5324955 (25 bp)
GCTACATCCCCAAACATTCGATAAT
LOC_Os02g10160
Os.25152.1.S1_at--1126--2911Chr02:5324896..5324920 (25 bp)
AAGGCATGGCCAGGTTCAGAGGTCC
LOC_Os02g10160
Os.25152.1.S1_at--1073--9791Chr02:5324865..5324889 (25 bp)
TAACCGGAGGGCACGTATCGTCGTT
LOC_Os02g10160
Os.25152.1.S1_at--938--8271Chr02:5324722..5324746 (25 bp)
GGCATGCCACATGACAAGATCACAT
LOC_Os02g10160
Target Sequence 
GCCACAGCTTGGGATGCATTGAGGAAAGATGCAGCAACATTGGCCCAAGACGTAACTTCTTTGACAGAAGACANGGCNCA
GAAATCAGGAATCACTATTGAGCAAGTAAGAGAGAGGTTGCGATCAGTGCTGTCTTTGACTGACGTCACTCGATTTCCAG
TGCCAAAGAACCCACAGGCTGTCATTTTTGTTGGTGCAACGGATGACGGCTACATCCCCAAACATTCGATAATGGAGCTC
CAAAAGGCATGGCCAGGTTCAGAGGTCCGGTGGGTAACCGGAGGGCACGTATCGTCGTTTTTCCTCCACAACGANGCGTT
TCGCAAGGCCATNGTTGATGCTCTTGATAGACTATAACAGCAGAGGAAACTCATCTTTGTGATGGCATTTCTTGGTGTGC
TTGTTGTGAAACTCATAGGCATGCCACATGACAAGATCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis