Browse Element(s) Details


Os.25230.2.A1_at

Description gb:CB621476
DB_XREF= gi:29616464
DB_XREF=OSIIEa07G02.r
CLONE=OSIIEa07G02
TID=Os.25230.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.25230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAb0008A05.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g184804/11Indole-3-acetate beta-glucosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os10g18490NANA10+9057750..9058355Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g18500OsAffx.6691.1.S1_at11/1110+9059072..9059563hypothetical protein
LOC_Os10g18510NANA10+9061841..9064122UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os10g18520NANA10+9064903..9065118hypothetical protein
LOC_Os10g18530NANA10+9068364..9069065Cytokinin-O-glucosyltransferase 2, putative
LOC_Os10g18540Os.10731.2.A1_at1/1110+9071664..9073920retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18550Os.27066.1.A1_x_at1/1110+9076666..9079862expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25230.2.A1_at--709--5671Chr10:9054497..9054521 (25 bp)
GACATCTGGCGTGTCGGGCTCCCAG
LOC_Os10g18480
Os.25230.2.A1_at--590--8271Chr10:9054452..9054476 (25 bp)
GGCATGGTCACGAAGGAGCACCTCG
LOC_Os10g18480
Os.25230.2.A1_at--546--7511Chr10:9054337..9054361 (25 bp)
GTGGTTGCTCCCATGGCAATTTCGA
LOC_Os10g18480
Os.25230.2.A1_at--1121--8211Chr10:9054323..9054347 (25 bp)
GGCAATTTCGACATGTTCGTGGAAT
LOC_Os10g18480
Os.25230.2.A1_at--168--9431Chr10:9054307..9054331 (25 bp)
TCGTGGAATCGATCATGTCATGAGT
NONE
Os.25230.2.A1_at--369--1111Chr10:9054285..9054309 (25 bp)
AGTGATGCATACCTCGACGTTGAAC
NONE
Os.25230.2.A1_at--130--3571Chr10:9054231..9054255 (25 bp)
CATAAGATATCATGGCCTTTGCTAT
NONE
Os.25230.2.A1_at--1095--8931Chr10:9054129..9054153 (25 bp)
TGAAATGTTTCGTAAACTTTCCTCG
NONE
Os.25230.2.A1_at--879--5512Chr10:9061622..9061646 (25 bp)
GAAAATGTTGTATTGGCCCTAATCC
NONE
Os.25230.2.A1_at--376--8411Chr10:9054082..9054106 (25 bp)
GGCCCTAATCCAAGTTGTAACATTA
NONE
Os.25230.2.A1_at--793--3031Chr10:9054003..9054027 (25 bp)
AATCCACGCATTCGCATGGACATGT
NONE
Target Sequence 
GACATCTGGCGTGTCGGGCTCCCAGCCGTCGCCGACAAGAAGTCGGGCATGGTCACGAAGGAGCACCTCGCCGGCAGAGT
GGAGGAGGTGATGGGAGACGCCGGCATGAGAGAGAGGATTNNNNNGATNATGGTGGTGGCACACGAGAGCGTTCAGGAGG
GTGGTTGCTCCCATGGCAATTTCGACATGTTCGTGGAATCGATCATGTCATGAGTGATGCATACCTCGACGTTGAACAGA
AATACTCAAGAAATAAGATTGGCAATCATAAGATATCATGGCCTTTGCTATCGAGAGAGGGATACATGACAACAAGAGTC
AAGACTCCGGAGGGGAGGTTGGATAAGAAGCTAACAGGAGGCTCAAATTGAAATGTTTCGTAAACTTTCCTCGTTGAAAG
TGAAAATGTTGTATTGGCCCTAATCCAAGTTGTAACATTAGTAAAAAGAAGTGGACTATATATAATTTACTCTTTCAAAT
TTAACTAGAAAGANAATCCACGCATTCGCATGGACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25230.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis