Browse Element(s) Details


Os.25440.1.S1_x_at

Description gb:AK108777.1
DB_XREF= gi:32993986
TID=Os.25440.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A01, full insert sequence.
FL= gb:AK108777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0274011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25440.1.S1_x_at--66--2091Chr02:1038891..1038915 (25 bp)
ACATACACCTCGCTGATGAACGGGA
LOC_Os02g02740
Os.25440.1.S1_x_at--637--5491Chr02:1038788..1038812 (25 bp)
GAACATACAACACTCTGCTCATGGG
LOC_Os02g02740
Os.25440.1.S1_x_at--710--2771Chr02:1038738..1038762 (25 bp)
AAGGCCGTCGATGTTTACAAATCCA
LOC_Os02g02740
Os.25440.1.S1_x_at--565--2271Chr02:1038720..1038744 (25 bp)
AAATCCATGGTTGGTGCCGCGATGA
LOC_Os02g02740
Os.25440.1.S1_x_at--185--5411Chr02:1038690..1038714 (25 bp)
GAAGCTCCAGCTTATGCGACATTCG
LOC_Os02g02740
Os.25440.1.S1_x_at--1043--91Chr02:1038670..1038694 (25 bp)
ATTCGTCAGGGCGTTGTGTCGTGCA
LOC_Os02g02740
Os.25440.1.S1_x_at--392--9371Chr02:1038563..1038587 (25 bp)
TCGAGAACTCGCTCAAGTGGCTGCA
LOC_Os02g02740
Os.25440.1.S1_x_at--664--911Chr02:1038519..1038543 (25 bp)
AGGCTGCATGGCCAGTATCTTTGTC
LOC_Os02g02740
Os.25440.1.S1_x_at--658--8571Chr02:1038492..1038516 (25 bp)
TGGTACTTGCTTCAGCCTTAGTTTT
LOC_Os02g02740
Os.25440.1.S1_x_at--490--671Chr02:1038460..1038484 (25 bp)
ATGAAAAGCTAGTTGCCTGCCTTAA
LOC_Os02g02740
Os.25440.1.S1_x_at--368--6691Chr02:1038449..1038473 (25 bp)
GTTGCCTGCCTTAATTTGTTGTATT
LOC_Os02g02740
Target Sequence 
ACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCCATGGGAGCGCTTGCTCTCCTCGAGGAGATGGAGGC
CAAGGGATGCGAGCCGAATGAGCGAACATACAACACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCG
TCGATGTTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGT
CGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTA
TACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCT
GGTACTTGCTTCAGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25440.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis