Browse Element(s) Details


Os.25466.1.S1_at

Description gb:CA765218
DB_XREF= gi:27546951
DB_XREF=AF53-Rpf_06_K19_T7_078.ab1
CLONE=C0002179
TID=Os.25466.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25466 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g202004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20180OsAffx.26077.1.S1_at11/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180Os.7905.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20180OsAffx.30455.1.S1_at1/114+11222511..11226645GDSL-like Lipase/Acylhydrolase family protein
LOC_Os04g20189NANA4+11228900..11229157NA
LOC_Os04g20200OsAffx.3833.1.S1_at11/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25466.1.S1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20200Os.25340.1.A1_at4/114+11233340..11236710hypothetical protein
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25466.1.S1_at--509--851Chr04:11234142..11234166 (25 bp)
ATGGCTTCATTTATATTCGACCCTA
LOC_Os04g20200
Os.25466.1.S1_at--364--10211Chr04:11234155..11234179 (25 bp)
TATTCGACCCTATGGCAATGTCGGA
LOC_Os04g20200
Os.25466.1.S1_at--232--4651NONE
GCAATGTCGGAGCTAACCCGGGTTT
NONE
Os.25466.1.S1_at--426--191NONE
ATTTCATTCCATATAGGTTCCCACA
NONE
Os.25466.1.S1_at--73--10091Chr04:11234273..11234297 (25 bp)
TAGGTTCCCACATCTTTTCTAGGTA
LOC_Os04g20200
Os.25466.1.S1_at--430--9551NONE
TCTTTTCTAGGTACCCTTGACACTA
NONE
Os.25466.1.S1_at--1050--8191NONE
GGAAGGCCTTCTAGGTAACATTGAT
NONE
Os.25466.1.S1_at--752--4091NONE
CGAATTTTGGAAGGCCTTCGCTGAT
NONE
Os.25466.1.S1_at--695--851Chr04:11234379..11234403 (25 bp)
AGGCCTTCGCTGATTGCTAAATATT
LOC_Os04g20200
Os.25466.1.S1_at--984--4351NONE
GCTAAATATTTTGGAAGGCCTTTCG
NONE
Os.25466.1.S1_at--157--5331NONE
GAAGATAGACCAAAACCTGTTTACT
NONE
Target Sequence 
ATGGCTTCATTTATATTCGACCCTATGGCAATGTCGGAGCTAACCCGGGTTTGATTATTTGTGATCACCTCAAGTGTTGC
TGCTTAAGCCAAAGGAAGAGGAAAAACTTTTATATAAGCATTTCATTCCATATAGGTTCCCACATCTTTTCTAGGTACCC
TTGACACTAGAAAAGATTGGAAGGCCTTCTAGGTAACATTGATACTCCTGTCCAAAAGGTGTTTGACGAATTTTGGAAGG
CCTTCGCTGATTGCTAAATATTTTGGAAGGCCTTTCGTTGNTTGCTGAAGATAGACCAAAACCTGTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis