Browse Element(s) Details


Os.25556.1.S1_x_at

Description gb:AK120474.1
DB_XREF= gi:37990097
TID=Os.25556.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110P15, full insert sequence.
FL= gb:AK120474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g284007/11expressed protein
LOC_Os08g283503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g284301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28350Os.25556.1.S1_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_x_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_x_at3/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_at2/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.5211.1.S1_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.17546.2.S1_x_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28360OsAffx.29396.3.S1_at11/118+17171692..17173987hypothetical protein
LOC_Os08g28370OsAffx.29397.1.S1_at11/118+17175393..17176177hypothetical protein
LOC_Os08g28370OsAffx.20020.1.S1_x_at1/118+17175393..17176177hypothetical protein
LOC_Os08g28380OsAffx.17208.1.S1_at7/118+17179139..17179948expressed protein
LOC_Os08g28390NANA8+17181056..17182773retrotransposon protein, putative, unclassified
LOC_Os08g28400OsAffx.29398.1.S1_at11/118+17187749..17190395expressed protein
LOC_Os08g28400Os.25556.1.S1_x_at7/118+17187749..17190395expressed protein
LOC_Os08g28410OsAffx.29399.1.S1_at11/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28410Os.50043.1.A1_at1/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25556.1.S1_x_at--632--5291Chr08:17190296..17190320 (25 bp)
GAAGGCCAGCCAAGATCACCAGGAC
LOC_Os08g28400
Os.25556.1.S1_x_at--1147--9771Chr08:17190271..17190295 (25 bp)
TAAGCCTTTGGCGACTCATGATTCC
LOC_Os08g28400
Os.25556.1.S1_x_at--643--1751Chr08:17189973..17189997 (25 bp)
ACCTCGTTTCAAGGAGCTTCAGCAA
LOC_Os08g28400
Os.25556.1.S1_x_at--146--3671Chr08:17189933..17189957 (25 bp)
CTTAGGGAGGCATCTGCTGCAGGAA
LOC_Os08g28400
Os.25556.1.S1_x_at--750--72Chr08:17189892..17189916 (25 bp)
ATTGCTGGATGCGTTTGTGGACTCT
LOC_Os08g28400
Os.25556.1.S1_x_at--7--8131Chr08:17189874..17189898 (25 bp)
GGACTCTATCTTCACATTCAGTCAT
LOC_Os08g28400
Os.25556.1.S1_x_at--102--871NONE
ACGTCCCACCGAGAGTAATTTTGCA
NONE
Os.25556.1.S1_x_at--504--3551Chr08:17189193..17189217 (25 bp)
GGGCAATCCCGGAGGACTTTCCAGA
LOC_Os08g28400
Os.25556.1.S1_x_at--645--6954Chr11:19261431..19261454 (24 bp)
GTAGACTTCAATAACGTGTTCTCCT
NONE
Os.25556.1.S1_x_at--330--1917Chr11:19261443..19261467 (25 bp)
ACGTGTTCTCCTTATCTTAGATGGG
NONE
Os.25556.1.S1_x_at--653--10359Chr11:19261474..19261498 (25 bp)
TTTATTTTAAGTGCGTGTTCTCAAT
NONE
Target Sequence 
GAAGGCCAGCCAAGATCACCAGGACTAAGCCTTTGGCGACTCATGATTCCTCTGCGCACATCCCACCTCGTTTCAAGGAG
CTTCAGCAAGTATTGAAAACCAAACTTAGGGAGGCATCTGCTGCAGGAAGCAGTGCTTCCAAGAAATTGCTGGATGCGTT
TGTGGACTCTATCTTCACATTCAGTCATCAATCTTTACGTCCCACCGAGAGTAATTTTGCACCAGTTGAAGAAATTGGTC
AAATAACAAANATATTGCGGATAGAAGGGGCAATCCCGGAGGACTTTCCAGAGGGTGTATATATTAGAAATGGTAATTTT
CAGGGCAACATATTGGCTCCGGTGTTGGGCTCAGCTACAAAGGTGTGATGAAGATGGCGAGTTTATGAAGGTTGCATGCC
GTAGGCTTGAGACGACAGTTATGCAACTTTTTGCCAATTATGGTTGGAGATTCACAAGTAGACTTCAATAACGTGTTCTC
CTTATCTTAGATGGGTTATTTTTTATTTTAAGTGCGTGTTCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25556.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis