Browse Element(s) Details


Os.25561.1.S1_at

Description gb:AK059562.1
DB_XREF= gi:32969580
TID=Os.25561.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H03, full insert sequence.
FL= gb:AK059562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2273010/11one helix protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22670Os.4951.1.S1_at10/115+12788250..12794695Transcription factor IIA, alpha/beta subunit family protein, expressed
LOC_Os05g22680OsAffx.12157.1.S1_at1/115+12800481..12801328retrotransposon protein, putative, unclassified
LOC_Os05g22690OsAffx.2719.1.S1_at2/115+12803008..12803511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22700OsAffx.11392.2.S1_x_at3/115+12803770..12805178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22710OsAffx.32332.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32333.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32331.1.S1_x_at7/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32334.1.S1_x_at5/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22730Os.25561.1.S1_at10/115+12818200..12819117one helix protein, putative, expressed
LOC_Os05g22740OsAffx.15207.1.S1_at11/115+12821691..12822482hypothetical protein
LOC_Os05g22750OsAffx.18275.1.S1_x_at2/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22750OsAffx.26607.2.S1_at1/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22760NANA5+12833017..12835427hypothetical protein
LOC_Os05g22770OsAffx.8429.1.S1_at1/115+12836559..12841388retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009644biological_processresponse to high light intensity
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25561.1.S1_at--904--2951Chr05:12818382..12818406 (25 bp)
AATGGCGGCGACAGCTACACTTGCT
LOC_Os05g22730
Os.25561.1.S1_at--720--431Chr05:12818434..12818458 (25 bp)
ATCTTGAGCCACAAGCCTCTGAGGA
LOC_Os05g22730
Os.25561.1.S1_at--326--6191Chr05:12818454..12818478 (25 bp)
GAGGAAGCTTGGTCTATCCCTGGAA
LOC_Os05g22730
Os.25561.1.S1_at--781--2351Chr05:12818685..12818709 (25 bp)
AAAGCTGAGTGAGCCCTTCCTGGGT
LOC_Os05g22730
Os.25561.1.S1_at--873--8631Chr05:12818705..12818729 (25 bp)
TGGGTTTCACCAGGACTGCAGAGAT
LOC_Os05g22730
Os.25561.1.S1_at--283--1271Chr05:12818726..12818750 (25 bp)
AGATATGGAACTCCAGGGCCTGCAT
LOC_Os05g22730
Os.25561.1.S1_at--496--9051Chr05:12818746..12818770 (25 bp)
TGCATGATTGGCCTCATTGGCACCT
LOC_Os05g22730
Os.25561.1.S1_at--404--3611Chr05:12818760..12818784 (25 bp)
CATTGGCACCTTCATCGTGGAGCTG
LOC_Os05g22730
Os.25561.1.S1_at--568--2051Chr05:12818960..12818984 (25 bp)
ACTTGATCTCCCTCTTTAAATGCTA
LOC_Os05g22730
Os.25561.1.S1_at--1106--6131Chr05:12819047..12819071 (25 bp)
GAGGGATTTTCACTTCTTGTTTGTA
LOC_Os05g22730
Os.25561.1.S1_at--238--8951Chr05:12819098..12819118 (21 bp)
TGACGGTGTTTTGCCTGCCTAAAAA
NONE
Target Sequence 
AATGGCGGCGACAGCTACACTTGCTGCCCCCTCCTTCTTGGCACATCAGTCGATCTTGAGCCACAAGCCTCTGAGGAAGC
TTGGTCTATCCCTGGAACTGCCAAGAACCAGATCTGTCAAAATTAGAGCTGCAAAGCTGCCTGCAGGGGTTGAGGTGCCG
AGGAAGCAGCCAAAGCTGAGTGAGCCCTTCCTGGGTTTCACCAGGACTGCAGAGATATGGAACTCCAGGGCCTGCATGAT
TGGCCTCATTGGCACCTTCATCGTGGAGCTGGTGCTGAACAAGGGCATTCTTCAGATGATTGGTGTGGAAGTCGGCAAGG
GACTTGATCTCCCTCTTTAAATGCTAGTCCATATATATTTTGTACCATATATACTATGAGATTTATGCAGTGAAATTATT
AGAACAAAGAGGGATTTTCACTTCTTGTTTGTACTAATATCATCAGAGAGATATATATCTGACGGTGTTTTGCCTGCCTA
AAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis