Browse Element(s) Details


Os.25639.1.S1_at

Description gb:AK100844.1
DB_XREF= gi:32986053
TID=Os.25639.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25639 (NCBI UniGene Cluster)
UG_TITLE=FK506 binding protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123G09, full insert sequence.
FL= gb:AK100844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2842011/1170 kDa peptidylprolyl isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28370OsAffx.26206.1.S1_at10/114+16607668..16607981hypothetical protein
LOC_Os04g28380NANA4+16612639..16612922NA
LOC_Os04g28390NANA4+16614697..16614897hypothetical protein
LOC_Os04g28399NANA4+16615372..16616803NA
LOC_Os04g28410Os.54330.1.S1_at11/114+16619997..16620867expressed protein
LOC_Os04g28420Os.25639.1.S1_at11/114+16626460..1663058570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os04g28430NANA4+16641025..16641630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g28440OsAffx.26208.1.S1_at11/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.22850.1.S1_x_at1/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.11259.1.S1_at1/114+16644339..16646796hypothetical protein
LOC_Os04g28450Os.27004.1.A1_at1/114+16647534..16648651hypothetical protein
LOC_Os04g28450OsAffx.11264.1.S1_s_at1/114+16647534..16648651hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25639.1.S1_at--74--9491Chr04:16626787..16626811 (25 bp)
TCTGAACCTGGTTACTGCTAGTACT
LOC_Os04g28420
Os.25639.1.S1_at--750--7011Chr04:16626767..16626791 (25 bp)
GTACTACTGTCTCTACTGGTTGTAT
LOC_Os04g28420
Os.25639.1.S1_at--74--3131Chr04:16626711..16626735 (25 bp)
AATTTGCCCTTTGCTTGATAGTTGC
LOC_Os04g28420
Os.25639.1.S1_at--888--1151Chr04:16626686..16626710 (25 bp)
AGTCTTTGCAACTCTGCACCCATAT
LOC_Os04g28420
Os.25639.1.S1_at--215--8691Chr04:16626662..16626686 (25 bp)
TGTGCTCAGCTTTGTACGAGAAGTG
LOC_Os04g28420
Os.25639.1.S1_at--463--4071Chr04:16626646..16626670 (25 bp)
CGAGAAGTGGTTGCCGTCATTTGAA
LOC_Os04g28420
Os.25639.1.S1_at--277--351Chr04:16626574..16626598 (25 bp)
ATAACGACACTTTGGACTGCGCTAC
LOC_Os04g28420
Os.25639.1.S1_at--269--5731Chr04:16626560..16626584 (25 bp)
GACTGCGCTACTAATGTTGTTCTTT
LOC_Os04g28420
Os.25639.1.S1_at--31--9831Chr04:16626512..16626536 (25 bp)
TAACATCTGTGCCTTGTACGCAGGA
LOC_Os04g28420
Os.25639.1.S1_at--392--9951Chr04:16626496..16626520 (25 bp)
TACGCAGGACGTATGTCCCGACATT
LOC_Os04g28420
Os.25639.1.S1_at--49--6931Chr04:16626486..16626510 (25 bp)
GTATGTCCCGACATTGTTTGTTTGT
LOC_Os04g28420
Target Sequence 
TCTGAACCTGGTTACTGCTAGTACTACTGTCTCTACTGGTTGTATGAGTATGAAATATGAATGGAAAATGGTAGTTAATT
TGCCCTTTGCTTGATAGTTGCAGTCTTTGCAACTCTGCACCCATATGTGCTCAGCTTTGTACGAGAAGTGGTTGCCGTCA
TTTGAAGATGTGATGCTGTGATTGTATTGTGGTGTTAGAAGAGCAAAAATGCCATAACGACACTTTGGACTGCGCTACTA
ATGTTGTTCTTTCTTGTTTCTATTGCAATATGGTATAACATCTGTGCCTTGTACGCAGGACGTATGTCCCGACATTGTTT
GTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis