Browse Element(s) Details


Os.25964.1.S2_a_at

Description gb:AK063907.1
DB_XREF= gi:32973925
TID=Os.25964.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A01, full insert sequence.
FL= gb:AK103258.1 gb:AK063907.1 gb:AK107911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1718011/11COP9 signalosome complex subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25964.1.S2_a_at--297--9591Chr01:9881659..9881683 (25 bp)
TCTTGGTCTCACTCATTCTGGATAA
LOC_Os01g17180
Os.25964.1.S2_a_at--354--6471Chr01:9881679..9881703 (25 bp)
GATAACCGAATCCAGGGCCACATAG
LOC_Os01g17180
Os.25964.1.S2_a_at--40--2531Chr01:9881882..9881906 (25 bp)
CTACCAAACGGTGTCCAACAGAGTT
LOC_Os01g17180
Os.25964.1.S2_a_at--940--8231Chr01:9881948..9881972 (25 bp)
GGCACCTGCTTGCACGTTTTGTTGT
LOC_Os01g17180
Os.25964.1.S2_a_at--545--5251Chr01:9882116..9882140 (25 bp)
GAATCTATCTGCAAATTCCAACCCC
LOC_Os01g17180
Os.25964.1.S2_a_at--450--9931Chr01:9882154..9882178 (25 bp)
TAGCGTCAATGGCTCGAAACTTTTG
LOC_Os01g17180
Os.25964.1.S2_a_at--477--10411Chr01:9882174..9882198 (25 bp)
TTTTGGTTTTGTTGGCATTGCCGCA
LOC_Os01g17180
Os.25964.1.S2_a_at--34--8291Chr01:9882187..9882211 (25 bp)
GGCATTGCCGCACTAGCAAATTTTG
LOC_Os01g17180
Os.25964.1.S2_a_at--829--9891Chr01:9882266..9882290 (25 bp)
TACTGCTAATATTGTGCCGTTGCCG
LOC_Os01g17180
Os.25964.1.S2_a_at--611--9171Chr01:9882286..9882310 (25 bp)
TGCCGAGTTCTGATAGTGTTGCCAA
LOC_Os01g17180
Os.25964.1.S2_a_at--1089--7411Chr01:9882301..9882325 (25 bp)
GTGTTGCCAACCAATCACTTTCAAA
LOC_Os01g17180
Target Sequence 
TCTTGGTCTCACTCATTCTGGATAACCGAATCCAGGGCCACATAGNTCAGGTGAACAAGTTACTAGAACGTGGTGACAGG
TCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAG
AGTTGGGTGAGAGAGATAGCAGGATGCCTGGGCTGCACTGCGCTTGGCACCTGCTTGCACGTTTTGTTGTGGTGGGTAAA
TGCAGCGAGTGTTTGGTGCGTGCATTACATTTGAGATAGGCTCTTGGATAGGTAAAGAAAAAAACAGTCTCGTGTATTAA
ACATGGTACTCTTTTGCGCGCCATGTGAAGATGCTGGGATTTTGTCCTGAACTGAATCTATCTGCAAATTCCAACCCCTC
TGAAACTATACTAGCGTCAATGGCTCGAAACTTTTGGTTTTGTTGGCATTGCCGCACTAGCAAATTTTGGTATGGTAGAG
AGAATGTTTGGTTCCGTGNAAAATATGCACCAGGTACAAGACATACTGCTAATATTGTGCCGTTGCCGAGTTCTGATAGT
GTTGCCAACCAATCACTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25964.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis