Browse Element(s) Details


Os.26049.1.S2_at

Description gb:AK120163.1
DB_XREF= gi:37989786
TID=Os.26049.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-126-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031E02, full insert sequence.
FL= gb:AK120163.1 gb:AK105467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2898011/11RNA exonuclease 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28950OsAffx.29407.2.S1_at9/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.29407.1.S1_at4/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28950OsAffx.32068.1.S1_at1/118+17579032..17582096Response regulator receiver domain containing protein
LOC_Os08g28960OsAffx.29408.1.S1_at10/118+17587876..17592203expressed protein
LOC_Os08g28980Os.26049.1.S2_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980Os.26049.1.S1_at11/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28980OsAffx.26666.1.S1_x_at1/118+17597251..17601967RNA exonuclease 4, putative, expressed
LOC_Os08g28970Os.9700.1.S1_at10/118+17597590..17599043expressed protein
LOC_Os08g28990Os.41695.15.S1_s_at11/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.2.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.3.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.5.S1_x_at9/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.4.S1_x_at1/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g29000OsAffx.19542.3.S1_x_at4/118+17616312..17621988retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29010OsAffx.29409.1.S1_at11/118+17624162..17625507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26049.1.S2_at--242--6571Chr08:17597987..17598011 (25 bp)
GATTCAGCTGTTCAGTTGTCACAGA
LOC_Os08g28980
Os.26049.1.S2_at--515--8571Chr08:17597923..17597947 (25 bp)
TGGTTTACCTGCACCATGCGGCGGA
LOC_Os08g28980
Os.26049.1.S2_at--332--8111Chr08:17597901..17597925 (25 bp)
GGACCCATGCCAGCTTGTTGTGGTT
LOC_Os08g28980
Os.26049.1.S2_at--73--8831Chr08:17597886..17597910 (25 bp)
TGTTGTGGTTCTCGTAGCCGATGAC
LOC_Os08g28980
Os.26049.1.S2_at--817--6951Chr08:17597816..17597840 (25 bp)
GTAGCCGAACATGATCACCAGACCA
LOC_Os08g28980
Os.26049.1.S2_at--290--851Chr08:17597790..17597814 (25 bp)
ATGGCACAAGCACCAGGTCCAGGGA
LOC_Os08g28980
Os.26049.1.S2_at--667--1031Chr08:17597776..17597800 (25 bp)
AGGTCCAGGGAGCTCTTCTGCATCA
LOC_Os08g28980
Os.26049.1.S2_at--887--2571Chr08:17597458..17597482 (25 bp)
AACGGTACATTCTGGCTTGGCTTGT
LOC_Os08g28980
Os.26049.1.S2_at--401--3611Chr08:17597443..17597467 (25 bp)
CTTGGCTTGTCGCTTGGGATCAAAG
LOC_Os08g28980
Os.26049.1.S2_at--616--3031Chr08:17597368..17597392 (25 bp)
AATCCAGGCAATTGTTGCTTCCCGG
LOC_Os08g28980
Os.26049.1.S2_at--462--10471Chr08:17597342..17597366 (25 bp)
TTACTGTATCTCCTAACCTTCCAAG
LOC_Os08g28980
Target Sequence 
GATTCAGCTGTTCAGTTGTCACAGAAAATTCAGTTGCTCCATGTCGCCGGCGGCCGGCGGTGGGTGGTTTACCTGCACCA
TGCGGCGGACCCATGCCAGCTTGTTGTGGTTCTCGTAGCCGATGACGGTGGCGGCGGGGCGGCGGAGAATCCGGTAGAGG
AGGATGAGGTGGTAGCCGAACATGATCACCAGACCACATGGCACAAGCACCAGGTCCAGGGAGCTCTTCTGCATCATCAT
CACCACCATCTTCTCTTGCCCTCCTCCGAGTGGTGGAGCTGGGTTGCTTATGGATTAATGGATAGGATCAGTACGTGGTA
CCAACGGTACATTCTGGCTTGGCTTGTCGCTTGGGATCAAAGACTTGGGAGGAGGGTCAGGCAAGCAAAATTCATGGAGC
TTGCTTCCAAGAAATCCAGGCAATTGTTGCTTCCCGGGTTACTGTATCTCCTAACCTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26049.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis