Browse Element(s) Details


Os.26297.1.S1_at

Description gb:AK064177.1
DB_XREF= gi:32974195
TID=Os.26297.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative male sterility 1 protein (P0471B04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A12, full insert sequence.
FL= gb:AK058582.1 gb:AK064177.1 gb:AK101067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6560011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein
LOC_Os01g65630Os.11443.1.S1_a_at11/111+38428398..38429840expressed protein
LOC_Os01g65640OsAffx.11745.1.S1_at11/111+38433709..38434251hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007140biological_processmale meiosis
GO:0009556biological_processmicrosporogenesis
GO:0009846biological_processpollen germination
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26297.1.S1_at--1068--7351Chr01:38411729..38411753 (25 bp)
GTGAACCTTCATGGAATCTTGTCTT
LOC_Os01g65600
Os.26297.1.S1_at--366--5251Chr01:38411742..38411766 (25 bp)
GAATCTTGTCTTTCTGACCAGTGAT
LOC_Os01g65600
Os.26297.1.S1_at--964--6271Chr01:38411769..38411793 (25 bp)
GATGTTAATCTATCCTCCTTGGAAG
LOC_Os01g65600
Os.26297.1.S1_at--2--9251Chr01:38411784..38411808 (25 bp)
TCCTTGGAAGCAATCCTTTCTCAGA
LOC_Os01g65600
Os.26297.1.S1_at--439--10571Chr01:38411801..38411825 (25 bp)
TTCTCAGAATTGTTCAGCACGCTCA
LOC_Os01g65600
Os.26297.1.S1_at--804--1491Chr01:38411816..38411840 (25 bp)
AGCACGCTCAATTCTGCATGCACAA
LOC_Os01g65600
Os.26297.1.S1_at--568--2331Chr01:38411937..38411961 (25 bp)
AAACTAGGCTTCTGGGCGTTACATT
LOC_Os01g65600
Os.26297.1.S1_at--314--2371Chr01:38412083..38412107 (25 bp)
AAACGAGTAGAGCTTCCGAACGCAC
LOC_Os01g65600
Os.26297.1.S1_at--9--5311Chr01:38412126..38412150 (25 bp)
GAAGGCTTAGTAGCACATGTTTGTT
LOC_Os01g65600
Os.26297.1.S1_at--1107--1191Chr01:38412204..38412228 (25 bp)
AGTTAACTGGTCAAAACTGGCTTGC
LOC_Os01g65600
Os.26297.1.S1_at--371--10571Chr01:38412234..38412258 (25 bp)
TTCTTTACCCATTCAAGTGCAGCAT
LOC_Os01g65600
Target Sequence 
GTGAACCTTCATGGAATCTTGTCTTTCTGACCAGTGATATGATGTTAATCTATCCTCCTTGGAAGCAATCCTTTCTCAGA
ATTGTTCAGCACGCTCAATTCTGCATGCACAATCAAGTATTTTTGCCAAGCTTTTAAGTTAGAAATATAACACAAGTCAA
CAAAACGTACGTAATGATGGATCAATATGAGAATATATGTCAGTGACAAAACTAGGCTTCTGGGCGTTACATTTCCTCTA
GAATATTGCTATCAGGATATATGCAAATGCAGAAATGGCTAACAGTAAGCAGATGAACAAGCAGCATCGCAAAAAAGGGA
TAGGAATGATCTATTATCACTTGAAGATTATACTAAACGAGTAGAGCTTCCGAACGCACCTGCAATACAAAAATGAGGAA
GGCTTAGTAGCACATGTTTGTTAGGGTAGTTTGCTAAAGACTTACTGCAAAATTTTCATAACATGATTGTTAGGCAGTTA
ACTGGTCAAAACTGGCTTGCAAATTTTCTTTACCCATTCAAGTGCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis