Browse Element(s) Details


Os.26472.1.S1_at

Description gb:AK064143.1
DB_XREF= gi:32974161
TID=Os.26472.1
CNT=51
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.26472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B11, full insert sequence.
FL= gb:AK064143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4063011/11TAZ zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed
LOC_Os04g40580Os.56033.1.S1_at11/114+23879216..23880536MBOAT family protein, expressed
LOC_Os04g40590OsAffx.4038.1.S1_x_at11/114+23882332..23883374membrane bound O-acyl transferase, putative, expressed
LOC_Os04g40600Os.9958.1.S1_at11/114+23883844..23885826Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40640Os.51647.1.S1_at1/114+23906872..23907222hypothetical protein
LOC_Os04g40650Os.28791.1.A1_at9/114+23910466..23914147neutral zinc metallopeptidase, putative, expressed
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26472.1.S1_at--442--7291Chr04:23898109..23898536 (25 bp)
GTGCCGCTGTGCAGTCATTTCAAGG
LOC_Os04g40630
Os.26472.1.S1_at--343--6031Chr04:23898706..23898730 (25 bp)
GAGATGACCGTGAGAACTGTGTTAC
LOC_Os04g40630
Os.26472.1.S1_at--242--6771Chr04:23898726..23898750 (25 bp)
GTTACGTACACAGGGCCATGTGGAT
LOC_Os04g40630
Os.26472.1.S1_at--998--9311Chr04:23898780..23898804 (25 bp)
TCGCGTGCAATTTTTCGTCGTGGGA
LOC_Os04g40630
Os.26472.1.S1_at--927--8151Chr04:23898816..23898840 (25 bp)
GGAAAATGGCGTGCCATATGCCCCT
LOC_Os04g40630
Os.26472.1.S1_at--911--251Chr04:23898831..23898855 (25 bp)
ATATGCCCCTGCTGCTGCCATGGGT
LOC_Os04g40630
Os.26472.1.S1_at--302--8651Chr04:23898864..23898888 (25 bp)
TGGGCTCTCGTAGGAGTGTGACATA
LOC_Os04g40630
Os.26472.1.S1_at--628--2891Chr04:23898915..23898939 (25 bp)
AAGGTGGTGCACGATTCGATTAGAC
LOC_Os04g40630
Os.26472.1.S1_at--578--7191Chr04:23898948..23898972 (25 bp)
GTCGGTGTTTCAAGCTTGTTGTAGC
LOC_Os04g40630
Os.26472.1.S1_at--1079--8971Chr04:23898978..23899002 (25 bp)
TGAACTCAAGCGGAACTCGTGTATT
LOC_Os04g40630
Os.26472.1.S1_at--345--9791Chr04:23899002..23899026 (25 bp)
TAAGTACTGTATTTGTGTTCCATCA
LOC_Os04g40630
Target Sequence 
GTGCCGCTGTGCAGTCATTTCAAGGGCAAGATGCGGGCGGAGAAGGCGGACAAGACGTGGCGGCTGCTGGTGAAGAAGGT
GACGAGGGCGAGGGCGATGTCGCGGCTGGCGGCGGGGCGCGAGCGCGAGGTGGTGCCGGAGGTGGTGGCCGCGTCGTGGG
CGAGGTACAGCAGCAGCGGAGGGGCCGCCAGGTTGAGATGACCGTGAGAACTGTGTTACGTACACAGGGCCATGTGGATG
GCGTGCGGGACCTTTTCGTGCGTGTTCCTCGCGTGCAATTTTTCGTCGTGGGAGGGAACACCGCGGAAAATGGCGTGCCA
TATGCCCCTGCTGCTGCCATGGGTGGGGTTGGTGGGCTCTCGTAGGAGTGTGACATAAGCCTGTGATGTCAGGAGGGGAA
TTGAAGGTGGTGCACGATTCGATTAGACAGTGTAGTGTCGGTGTTTCAAGCTTGTTGTAGCTGGAATGAACTCAAGCGGA
ACTCGTGTATTAAGTACTGTATTTGTGTTCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis