Browse Element(s) Details


Os.26545.1.A1_at

Description gb:AK108028.1
DB_XREF= gi:32993237
TID=Os.26545.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A12, full insert sequence.
FL= gb:AK108028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4153011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41480Os.11883.1.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41480Os.11883.2.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41490Os.55479.1.S1_at11/115+24208524..24209648circadian clock coupling factor ZGT, putative, expressed
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41520OsAffx.27276.1.S1_at11/115+24226697..24227557Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g41530Os.26545.1.A1_at11/115+24229645..24233859expressed protein
LOC_Os05g41540Os.26821.1.S1_at11/115+24237832..24239520bZIP transcription factor family protein, putative, expressed
LOC_Os05g41550Os.38283.1.S2_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S1_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S3_a_at11/115+24241592..24246732expressed protein
LOC_Os05g41550Os.38283.1.S4_at3/115+24241592..24246732expressed protein
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26545.1.A1_at--541--651Chr05:24232501..24232525 (25 bp)
ATGCAGATCTCCGTGCTCGTGGTAT
LOC_Os05g41530
Os.26545.1.A1_at--313--9291Chr05:24232532..24233009 (25 bp)
TCCGAAAATCGATATCAATGATGCT
LOC_Os05g41530
Os.26545.1.A1_at--369--3711Chr05:24233353..24233377 (25 bp)
CTGAAGAAACAGCTTACCGAGTCAA
LOC_Os05g41530
Os.26545.1.A1_at--40--4871Chr05:24233364..24233388 (25 bp)
GCTTACCGAGTCAAAAGCCGCCCGT
LOC_Os05g41530
Os.26545.1.A1_at--1092--4511Chr05:24233383..24233407 (25 bp)
GCCCGTACCACTAAAGCAAACAGCA
LOC_Os05g41530
Os.26545.1.A1_at--202--2151Chr05:24233402..24233426 (25 bp)
ACAGCAAACCTGTTGGTATGGACAT
LOC_Os05g41530
Os.26545.1.A1_at--999--7851Chr05:24233416..24233440 (25 bp)
GGTATGGACATGTTGTCAAGCAGCG
LOC_Os05g41530
Os.26545.1.A1_at--824--10251Chr05:24233476..24233500 (25 bp)
TTTGCTGTTGATTGGAGAGCACAAC
LOC_Os05g41530
Os.26545.1.A1_at--155--8971Chr05:24233547..24233571 (25 bp)
TGACAACATAGATCTGTTAGCATCC
LOC_Os05g41530
Os.26545.1.A1_at--795--1271Chr05:24233595..24233619 (25 bp)
AGATCCCAGCACCTCTAGGTTTCTG
LOC_Os05g41530
Os.26545.1.A1_at--314--5091Chr05:24233603..24233627 (25 bp)
GCACCTCTAGGTTTCTGCTTGAGGA
LOC_Os05g41530
Target Sequence 
ATGCAGATCTCCGTGCTCGTGGTATCCANACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAAT
TCAGGAGGNCTTGCAGGAAGTTGATGATCNCCTTGAAGAAGAGGAGATTGATGCTGCTNCTGAGAGAGAAGAGTACTTGN
CATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACT
AAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGNCGANGAAGATGACANCACGGA
TTTTGCTGTTGATTGGAGAGCACAACATTTGAAANGATGTGGAGATTTTTGTGATTGGNTACCCNCCGACGATGACAACA
TAGATCTGTTAGCATCCNCCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26545.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis