Browse Element(s) Details


Os.26592.3.S1_x_at

Description gb:NM_195996.1
DB_XREF= gi:37533351
TID=Os.26592.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26592 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Photosystem II P680 chlorophyll A apoprotein (OSJNAb0075K12.30), mRNA.
PROD=putative Photosystem II P680 chlorophyll Aapoprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2131011/11Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g152609/11Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os06g397107/11Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g106007/11Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g046806/11Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os03g359703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21260OsAffx.26050.13.S1_x_at5/1110+10524288..10524713NAD, putative
LOC_Os10g21270OsAffx.30475.1.S1_s_at11/1110+10527489..10529335ATP synthase beta chain, putative, expressed
LOC_Os10g21270OsAffx.30475.5.S1_x_at9/1110+10527489..10529335ATP synthase beta chain, putative, expressed
LOC_Os10g21280OsAffx.26050.2.S2_x_at11/1110+10530028..10531336Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os10g21280OsAffx.26050.37.S1_s_at7/1110+10530028..10531336Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os10g21290Os.29056.1.S1_s_at9/1110+10535365..10536288Apocytochrome f precursor, putative
LOC_Os10g21290OsAffx.32260.1.S1_at7/1110+10535365..10536288Apocytochrome f precursor, putative
LOC_Os10g21300Os.48031.1.S1_x_at7/1110+10543366..10543713ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os10g21300OsAffx.32314.1.S1_at2/1110+10543366..10543713ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os10g21310Os.26592.2.A1_s_at11/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21310Os.26592.1.S1_s_at11/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21310Os.26592.3.S1_x_at11/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21310Os.26592.2.A1_x_at7/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21330OsAffx.32331.1.S1_x_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330Os.26455.2.S1_s_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32332.1.S1_x_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32333.1.S1_x_at10/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32334.1.S1_x_at5/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330Os.26455.1.S1_at5/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010207biological_processphotosystem II assembly
GO:0019684biological_processphotosynthesis, light reaction
GO:0009539cellular_componentphotosystem II reaction center
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26592.3.S1_x_at--1078--4555Chr12:5646099..5646123 (25 bp)
GCGCGAACTTTTTGTACGCCGTATG
LOC_Os12g10600
Os.26592.3.S1_x_at--292--10335Chr12:5646110..5646134 (25 bp)
TTGTACGCCGTATGCCTACTTTTTT
LOC_Os12g10600
Os.26592.3.S1_x_at--592--7376Chr12:5646175..5646199 (25 bp)
GTGAGAGCGGACGTTCCTTTTAGAA
LOC_Os12g10600
Os.26592.3.S1_x_at--770--1214Chr12:5646274..5646298 (25 bp)
AGTTATTCTGATCCTGCTACTGTAA
LOC_Os12g10600
Os.26592.3.S1_x_at--898--251Chr10:10545784..10545808 (25 bp)
ATATGCGAGGCATTCCCAATTAGGG
LOC_Os10g21310
Os.26592.3.S1_x_at--318--10054Chr10:10545822..10545846 (25 bp)
TAGATCGGGCTACTTTGAAATCAGA
LOC_Os10g21310
Os.26592.3.S1_x_at--724--3433Chr10:10545843..10545867 (25 bp)
CAGATGGTGTTTTTCGCAGCAGTCC
LOC_Os10g21310
Os.26592.3.S1_x_at--175--6634Chr12:5646392..5646416 (25 bp)
GTTGGTTCACTTTTGGTCATGCTAC
LOC_Os12g10600
Os.26592.3.S1_x_at--678--634Chr12:5646410..5646434 (25 bp)
ATGCTACCTTTGCTTTGCTCTTCTT
LOC_Os12g10600
Os.26592.3.S1_x_at--506--3653Chr10:10545910..10545934 (25 bp)
CTTCTTTTTCGGACACATTTGGCAT
LOC_Os10g21310
Os.26592.3.S1_x_at--787--5415Chr12:5646461..5646485 (25 bp)
GAACCTTGTTCCGAGATGTTTTTGC
LOC_Os12g10600
Target Sequence 
GCGCGAACTTTTTGTACGCCGTATGCCTACTTTTTTTGAAACATTTCCGGTTGTTTTGGTAGATGAAGAGGGAATTGTGA
GAGCGGACGTTCCTTTTAGAAGAGCAGAATCCAAATATAGTGTTGAACAAGTAGGCGTAACGGTGGAGTTCTATGGTGGC
GAACTTAATGGAGTAAGTTATTCTGATCCTGCTACTGTAAAAAAATATGCGAGGCATTCCCAATTAGGGGAAATTTTTGA
ATTAGATCGGGCTACTTTGAAATCAGATGGTGTTTTTCGCAGCAGTCCAAGGGGTTGGTTCACTTTTGGTCATGCTACCT
TTGCTTTGCTCTTCTTTTTCGGACACATTTGGCATGGGGCTAGAACCTTGTTCCGAGATGTTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26592.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis