Browse Element(s) Details


Os.26684.1.S1_at

Description gb:AK111629.1
DB_XREF= gi:37988292
TID=Os.26684.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002A24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013115O13, full insert sequence.
FL= gb:AK098897.1 gb:AK112036.1 gb:AK111629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4976011/11Potassium transporter 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49720Os.313.1.S1_a_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49720Os.313.2.S2_at11/112+30386678..30390860Aldehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g49730OsAffx.3018.1.S1_at11/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49730OsAffx.22103.1.S1_at1/112+30392682..30398066Pre-mRNA splicing factor prp31, putative, expressed
LOC_Os02g49740OsAffx.24798.1.S1_at11/112+30399212..30399688hypothetical protein
LOC_Os02g49750NANA2+30401399..30401818hypothetical protein
LOC_Os02g49760Os.26684.1.S1_at11/112+30412629..30417270Potassium transporter 8, putative, expressed
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed
LOC_Os02g49780Os.9055.1.S1_at11/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_x_at1/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_at1/112+30426278..30428217expressed protein
LOC_Os02g49790OsAffx.3020.1.S1_at11/112+30429159..30431646expressed protein
LOC_Os02g49800Os.10843.1.S1_at11/112+30432084..30435591Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g49810OsAffx.3021.1.S1_at11/112+30436599..30436965hypothetical protein
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26684.1.S1_at--933--6711Chr02:30416670..30416694 (25 bp)
GTTCGTGCTGCCAAAGAATGCCCAG
LOC_Os02g49760
Os.26684.1.S1_at--380--6211Chr02:30416743..30416767 (25 bp)
GAGGCTGGAATGTCCTTCATCTTAG
LOC_Os02g49760
Os.26684.1.S1_at--288--5871Chr02:30416790..30416814 (25 bp)
GAGCGGGTCTAGTTTCATAAAGCGA
LOC_Os02g49760
Os.26684.1.S1_at--91--10751Chr02:30416842..30416866 (25 bp)
TTGAGGAGAAACAGCCGCGGACCAT
LOC_Os02g49760
Os.26684.1.S1_at--1016--8091Chr02:30416860..30416884 (25 bp)
GGACCATCTTATGCTGCTACCATAC
LOC_Os02g49760
Os.26684.1.S1_at--1101--8731Chr02:30416971..30416995 (25 bp)
TGTACATATCACTTCATGCCGACAC
LOC_Os02g49760
Os.26684.1.S1_at--979--10771Chr02:30417016..30417040 (25 bp)
TTGATGTTGGAGCACCTCATGGCCA
LOC_Os02g49760
Os.26684.1.S1_at--1145--8431Chr02:30417036..30417060 (25 bp)
GGCCAGCCAGCCAGTTGCAAATCTT
LOC_Os02g49760
Os.26684.1.S1_at--627--4951Chr02:30417082..30417106 (25 bp)
GCATTTTTGTCTGTAAAGCCTTCTG
LOC_Os02g49760
Os.26684.1.S1_at--762--8911Chr02:30417108..30417132 (25 bp)
TGAGCTGCTCCGTGTTGTTTTTTCC
LOC_Os02g49760
Os.26684.1.S1_at--791--2351Chr02:30417142..30417166 (25 bp)
AAACCTTTCGCTGTTGTGGATACCA
LOC_Os02g49760
Target Sequence 
GTTCGTGCTGCCAAAGAATGCCCAGGTGGACAGCGAAGTGCGCCGTGAGCTGCAGGAGCTCATGGATGCAAGGGAGGCTG
GAATGTCCTTCATCTTAGGACACTCCTACATGAAGGCGAAGAGCGGGTCTAGTTTCATAAAGCGAATCGTGATAAACTTC
TTCTACGAGTTCTTGAGGAGAAACAGCCGCGGACCATCTTATGCTGCTACCATACCTCATGCCTCCACACTGGAGGTGGG
AATGGTCTACCAAGTCTGATAGTAGCAGCAGCTGTATAAAGCTAGAGATGAGATCTCCATCTGTACATATCACTTCATGC
CGACACCGCTAACCTGAAGGTGGCAGTTGATGTTGGAGCACCTCATGGCCAGCCAGCCAGTTGCAAATCTTGGGAGAGCC
AACAGGGAGTGTGCATTTTTGTCTGTAAAGCCTTCTGTTGAGCTGCTCCGTGTTGTTTTTTCCCTTGTGAAGAAACCTTT
CGCTGTTGTGGATACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis