Browse Element(s) Details


Os.26697.1.S1_at

Description gb:AK073782.1
DB_XREF= gi:32983805
TID=Os.26697.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0027B08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068O12, full insert sequence.
FL= gb:AK073782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6158010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26697.1.S1_at--915--10631Chr03:34861215..34861239 (25 bp)
TTCCGGTACGTGGAGATGACTGTAA
LOC_Os03g61580
Os.26697.1.S1_at--311--6771Chr03:34861246..34861270 (25 bp)
GTTAGTGAAACATTGCCGTCTGAAT
LOC_Os03g61580
Os.26697.1.S1_at--384--9011Chr03:34861266..34861290 (25 bp)
TGAATTTTCAGCTGCCTTGAGCACA
LOC_Os03g61580
Os.26697.1.S1_at--1078--7911Chr03:34861347..34861371 (25 bp)
GGTTGTATCAGCCTACATGCTAACT
LOC_Os03g61580
Os.26697.1.S1_at--908--611Chr03:34861363..34861387 (25 bp)
ATGCTAACTTTTTTCCTGTCTCCAA
LOC_Os03g61580
Os.26697.1.S1_at--1016--10291Chr03:34861374..34861398 (25 bp)
TTTCCTGTCTCCAATAAGTTGTCTG
LOC_Os03g61580
Os.26697.1.S1_at--800--351Chr03:34861387..34861411 (25 bp)
ATAAGTTGTCTGGTGTAGCGGTGTA
LOC_Os03g61580
Os.26697.1.S1_at--350--9791Chr03:34861402..34861426 (25 bp)
TAGCGGTGTAGGTAACCCTTTGTGG
LOC_Os03g61580
Os.26697.1.S1_at--331--10151Chr03:34861561..34861585 (25 bp)
TATCTCGGTTACTTTTGATCAACAT
LOC_Os03g61580
Os.26697.1.S1_at--779--6491Chr03:34861594..34861618 (25 bp)
GATAGATCAGTTTGCACCTGTGCCT
LOC_Os03g61580
Os.26697.1.S1_at--968--10731Chr03:34861605..34861636 (25 bp)
TTGCACCTGTGCCTTGTACAAAAAA
NONE
Target Sequence 
TTCCGGTACGTGGAGATGACTGTAAATGTTTGTTAGTGAAACATTGCCGTCTGAATTTTCAGCTGCCTTGAGCACATCTG
CCTATGGCACATAGAGTATGATGATATGATGATGAATGCCCTCTTGTACGGGGGTTGTATCAGCCTACATGCTAACTTTT
TTCCTGTCTCCAATAAGTTGTCTGGTGTAGCGGTGTAGGTAACCCTTTGTGGGAGAGTAAAGATGGAAAGGAAAATTGGA
GACTTGTAGAACTTAAGAGGGGGAAAAAAAGAGAAAGAGCAAAAAAAAAAAGATTTTTTTGTTAGAATTAGACAACATCA
TGTGTTTGCATGTAAATTGTTTTTTTTATCTCGGTTACTTTTGATCAACATAGTGAGATGATAGATCAGTTTGCACCTGT
GCCTTGTACAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis