Browse Element(s) Details


Os.26701.1.S1_s_at

Description gb:AK071658.1
DB_XREF= gi:32981681
TID=Os.26701.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102N05, full insert sequence.
FL= gb:AK071658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1407011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed
LOC_Os01g14100Os.38014.1.S1_at11/111+7891763..7897352folate/biopterin transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26701.1.S1_s_at--538--8311Chr01:7873238..7873262 (25 bp)
GGCTCTACGGCCAGGGCGATCCATA
LOC_Os01g14070
Os.26701.1.S1_s_at--163--4811Chr01:7873997..7874021 (25 bp)
GCTCGAGATTATGAAGCAGGTGCTC
LOC_Os01g14070
Os.26701.1.S1_s_at--1097--9091Chr01:7874017..7874041 (25 bp)
TGCTCGTGGACATGGTCATGACCGC
LOC_Os01g14070
Os.26701.1.S1_s_at--1075--671Chr01:7874034..7874058 (25 bp)
ATGACCGCCTTCCTTGCTGTGGGAT
LOC_Os01g14070
Os.26701.1.S1_s_at--853--4311Chr01:7874045..7874069 (25 bp)
CCTTGCTGTGGGATTGGCATTGGCT
LOC_Os01g14070
Os.26701.1.S1_s_at--161--131Chr01:7874224..7874248 (25 bp)
ATTCATAGTCGGTTTCTTCCTCGGT
LOC_Os01g14070
Os.26701.1.S1_s_at--1102--9571Chr01:7874238..7874262 (25 bp)
TCTTCCTCGGTGCTATTCCTTGGTA
LOC_Os01g14070
Os.26701.1.S1_s_at--904--71Chr01:7874252..7874276 (25 bp)
ATTCCTTGGTATGTCGGAGCATTCC
LOC_Os01g14070
Os.26701.1.S1_s_at--252--8071Chr01:7874267..7874291 (25 bp)
GGAGCATTCCTACTGTGGTGTTCTA
LOC_Os01g14070
Os.26701.1.S1_s_at--228--2651Chr01:7874310..7874334 (25 bp)
AACCAGGATATGTAGCATGCGCTAT
LOC_Os01g14070
Os.26701.1.S1_s_at--69--7991Chr01:7875500..7875524 (25 bp)
GGATGCCCTTGTTCATGGTCATAAA
LOC_Os01g14070
Target Sequence 
GGCTCTACGGCCAGGGCGATCCATACTACCGCCCCCGCGGCGGGTACCAGGGCATTCCCGCTCGAGATTATGAAGCAGGT
GCTCGTGGACATGGTCATGACCGCCTTCCTTGCTGTGGGATTGGCATTGGCTGGTTTTTATTCATAGTCGGTTTCTTCCT
CGGTGCTATTCCTTGGTATGTCGGAGCATTCCTACTGTGGTGTTCTAGAGTGGACTACAGGGAGAAACCAGGATATGTAG
CATGCGCTATAGCGGCTGTCCTTGCCACCATTGCTATAATAATCGGAGCTACCGCTGGAGCTGCTTAATTACATTTTACA
TTGTGTCGTTATTGTACATACTGTATATCTCATGGATGCACAAACATTTAGTATGTCGTCTGCGATGTACCTTATTCAGC
TTTTCTTTTCCGTTTGATTTTTTAATGTTTAACAAGGAGAACGGATGCCCTTGTTCATGGTCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26701.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis