Browse Element(s) Details


Os.2677.1.S1_at

Description gb:D26537.1
DB_XREF= gi:454879
TID=Os.2677.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.2677 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for WSI76 protein induced by water stress, complete cds.
PROD=WSI76 protein induced by water stress
FL= gb:AK107065.1 gb:D26537.1 gb:AK099548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4883011/11galactinol synthase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2677.1.S1_at--826--1011Chr07:29219278..29219302 (25 bp)
AGGTCAAGGTCGTCCATTACTGTGC
LOC_Os07g48830
Os.2677.1.S1_at--837--9231Chr07:29219168..29219290 (25 bp)
TCCATTACTGTGCAGCGGGTTCGAA
LOC_Os07g48830
Os.2677.1.S1_at--1115--10611Chr07:29219149..29219173 (25 bp)
TTCGAAGCCATGGAGGTTCACCGGG
LOC_Os07g48830
Os.2677.1.S1_at--600--4211Chr07:29218916..29218940 (25 bp)
CCGCCGTCAAGTCTTGATAGCTACA
LOC_Os07g48830
Os.2677.1.S1_at--862--8391Chr07:29218882..29218906 (25 bp)
GGCGCTTATTAAGGAGTGCTAGCTA
LOC_Os07g48830
Os.2677.1.S1_at--523--7631Chr07:29218846..29218870 (25 bp)
GGGACATGATCTGCATAAACATTTT
LOC_Os07g48830
Os.2677.1.S1_at--85--6491Chr07:29218812..29218836 (25 bp)
GATATATCGGTCATGGTCTTACTTT
LOC_Os07g48830
Os.2677.1.S1_at--776--6131Chr07:29218756..29218780 (25 bp)
GAGGGAACACCCAAAGTCTGTATTC
LOC_Os07g48830
Os.2677.1.S1_at--7--9911Chr07:29218721..29218745 (25 bp)
TACGTACGTATATGGTTGGTCTAAC
LOC_Os07g48830
Os.2677.1.S1_at--273--2411Chr07:29218693..29218717 (25 bp)
AAACAGATCTGCCTACTATACATGT
LOC_Os07g48830
Os.2677.1.S1_at--655--2031Chr07:29218679..29218703 (25 bp)
ACTATACATGTACGTTACTGCTGAT
LOC_Os07g48830
Target Sequence 
AGGTCAAGGTCGTCCATTACTGTGCAGCGGGTTCGAAGCCATGGAGGTTCACCGGGAAGGAGGAGAACATGAACAGAGAA
GATATAAAGATGCTGGTGAAGAGGTGGTGGGACATCTACAACGACGAGAGCCTCGACTACAAGGAGGAGGAGGACAACGC
CGACGAGGCCAGCCAGCCGATGCGGACGGCGCTCGCCGAGGCCGGCGCCGTCAAGTACTTCCCGGCGCCCTCCGCCGCGT
AGGCGCGCTCGTCGCCGGCAGTGGCCGCCGTCAAGTCTTGATAGCTACAATAATAATTGGCGCTTATTAAGGAGTGCTAG
CTATGATTAATTAGGGGACATGATCTGCATAAACATTTTAGTATTGCAGATATATCGGTCATGGTCTTACTTTTGAGTGT
GTTTTTTTTTCTTTTGTTTAGTACGAGGGAACACCCAAAGTCTGTATTCAGTTTGTAAATACGTACGTATATGGTTGGTC
TAACTATAAACAGATCTGCCTACTATACATGTACGTTACTGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis