Browse Element(s) Details


Os.26862.1.S1_s_at

Description gb:CB650128
DB_XREF= gi:29645121
DB_XREF=OSJNEb14G14.r
CLONE=OSJNEb14G14
TID=Os.26862.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26862 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564570.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g042608/11saccharopine dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04230OsAffx.18662.1.S1_at11/1112+1789093..1790190hypothetical protein
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26862.1.S1_s_at--384--10352Chr12:1805443..1805467 (25 bp)
TTTTAGCAGTTCTTGAGGGCAGCAC
LOC_Os12g04260
Os.26862.1.S1_s_at--755--10332Chr12:1805444..1805468 (25 bp)
TTTAGCAGTTCTTGAGGGCAGCACA
LOC_Os12g04260
Os.26862.1.S1_s_at--872--10452Chr12:1805445..1805469 (25 bp)
TTAGCAGTTCTTGAGGGCAGCACAC
LOC_Os12g04260
Os.26862.1.S1_s_at--667--10012Chr12:1805446..1805470 (25 bp)
TAGCAGTTCTTGAGGGCAGCACACA
LOC_Os12g04260
Os.26862.1.S1_s_at--349--1532Chr12:1805447..1805471 (25 bp)
AGCAGTTCTTGAGGGCAGCACACAG
LOC_Os12g04260
Os.26862.1.S1_s_at--602--5032Chr12:1805448..1805472 (25 bp)
GCAGTTCTTGAGGGCAGCACACAGC
LOC_Os12g04260
Os.26862.1.S1_s_at--440--3972Chr12:1806002..1806026 (25 bp)
CGGGCGTCTCAAGGAACAACGATCT
LOC_Os12g04260
Os.26862.1.S1_s_at--522--7572Chr12:1806003..1806027 (25 bp)
GGGCGTCTCAAGGAACAACGATCTT
LOC_Os12g04260
Os.26862.1.S1_s_at--553--1352Chr12:1806305..1806329 (25 bp)
AGAGCAAGAGCGACAAATAGGACAG
NONE
Os.26862.1.S1_s_at--169--2772Chr12:1806310..1806334 (25 bp)
AAGAGCGACAAATAGGACAGGGCAA
NONE
Os.26862.1.S1_s_at--1118--1632Chr12:1806313..1806337 (25 bp)
AGCGACAAATAGGACAGGGCAATGA
NONE
Target Sequence 
TTTTAGCAGTTCTTGAGGGCAGCACACAGCCTGGCGTCTGGTTTCCAGAGGAGCCAGAGGGAGTAGCAATTGAATCAAGG
AAGGNGCTTCTTGANCGGGCGTCTCAAGGAACAACGATCTTCGTGATGAACAAGCCTTCCTGGATGATAGAGACTGATCC
AAAGGAAGTTGGCCTGGGAATATATGTGTAGGGAAATAATATGTTTCACTCACTATATANNANGTTTACAGTTCCTAATT
ATAATTTTGACGGTGAAATCTTAGCACTTACTACAAAGTTCTTGGGTATGAGCAAGAGCAAGAGCGACAAATAGGACAGG
GCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26862.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis