Browse Element(s) Details


Os.26880.1.S1_x_at

Description gb:CB624727
DB_XREF= gi:29619715
DB_XREF=OSIIEa13G17.r
CLONE=OSIIEa13G17
TID=Os.26880.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.26880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0022B05.42), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g030301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26880.1.S1_x_at--336--1872Chr07:1140051..1140075 (25 bp)
ACGAGGTGTTCTGGAGGTCTTGCCA
NONE
Os.26880.1.S1_x_at--454--7411Chr07:1140078..1140102 (25 bp)
GTGTTGCTTACCTCTGCATGGAGAA
NONE
Os.26880.1.S1_x_at--554--4831Chr07:1140147..1140171 (25 bp)
GCTCAGCTCTGGTGCGGCAACGAAG
NONE
Os.26880.1.S1_x_at--306--4571Chr07:1140236..1140260 (25 bp)
GCGCCCAACCATCGACTTATGAGAG
NONE
Os.26880.1.S1_x_at--1144--9631Chr07:1140278..1140302 (25 bp)
TCAGTTTTGGTGTGGTACAGCGGCA
NONE
Os.26880.1.S1_x_at--748--7651Chr07:1140308..1140332 (25 bp)
GGGAGTGTGTACATGGAGACCTATA
NONE
Os.26880.1.S1_x_at--1137--10151Chr07:1140375..1140399 (25 bp)
TATCTTTAGCTAGCCTTTCTGGAAG
NONE
Os.26880.1.S1_x_at--397--6611Chr07:1140399..1140423 (25 bp)
GATTGGTCAGTCAGCATTCAGTATT
NONE
Os.26880.1.S1_x_at--8--5771Chr07:1140431..1140455 (25 bp)
GACGATTGGTCAGTCAAAGTGGGCA
NONE
Os.26880.1.S1_x_at--34--7491Chr07:1140449..1140473 (25 bp)
GTGGGCAGAAACCAACTGGAGAACA
NONE
Os.26880.1.S1_x_at--1031--5691Chr07:1140474..1140498 (25 bp)
GACTAGAGCACTAACCAAACTTGAA
NONE
Target Sequence 
ACGAGGTGTTCTGGAGGTCTTGCCATGGTGTTGCTTACCTCTGCATGGAGAATGTGGTAACAGAGATGGCAGGGTGCAGG
CCGACTCATTGGCCGCGCTCAGCTCTGGTGCGGCAACGAAGACGGCGTGGTGGCTGGTGGCTTGTGGCGGCGCCCCAGCG
GGAGGGCCGGAAGAGGGGAGTGCGAGCGCCCAACCATCGACTTATGAGAGAGAGCTACATGTAAAATTCAGTTTTGGTGT
GGTACAGCGGCAGAAGGGGGAGTGTGTACATGGAGACCTATATGTTGAAAACAAATCCTACAGGGGTTTATTTCCAAAAA
TATTTATCTTTAGCTAGCCTTTCTGGAAGATTGGTCAGTCAGCATTCAGTATTGANTATTGACGATTGGTCAGTCAAAGT
GGGCAGAAACCAACTGGAGAACAGACTAGAGCACTAACCAAACTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26880.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis