Browse Element(s) Details


Os.26932.1.S1_at

Description gb:AY342322.1
DB_XREF= gi:33694267
GEN=MST6
TID=Os.26932.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26932 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) monosaccharide transporter 6 (MST6) mRNA, complete cds.
PROD=monosaccharide transporter 6
FL= gb:AY342322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3732011/11Glucose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein
LOC_Os07g37340NANA7+22365611..22365910hypothetical protein
LOC_Os07g37350Os.5797.1.S1_at11/117+22368586..22370786Armadillo/beta-catenin-like repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26932.1.S1_at--1151--611Chr07:22351895..22351919 (25 bp)
ATGCTCTGCCGCTTCAAGTTCATCC
LOC_Os07g37320
Os.26932.1.S1_at--334--7191Chr07:22351772..22351796 (25 bp)
GTCTGGAAGTCGCACTGGTACTGGG
LOC_Os07g37320
Os.26932.1.S1_at--428--8451Chr07:22351662..22351686 (25 bp)
GGCCAAGCTCGCCAACTGATGACCT
LOC_Os07g37320
Os.26932.1.S1_at--984--2551Chr07:22351649..22351673 (25 bp)
AACTGATGACCTCAGCGCGTCGGTC
LOC_Os07g37320
Os.26932.1.S1_at--881--7791Chr07:22351628..22351652 (25 bp)
GGTCGCTGACATCGTTCGCAAATAA
LOC_Os07g37320
Os.26932.1.S1_at--926--9371Chr07:22351617..22351641 (25 bp)
TCGTTCGCAAATAAGCTACCATTAA
LOC_Os07g37320
Os.26932.1.S1_at--396--10311Chr07:22351572..22351596 (25 bp)
TTTCTCATTTTTCTGTATTATACCC
LOC_Os07g37320
Os.26932.1.S1_at--1011--31Chr07:22351545..22351569 (25 bp)
ATTGTCTTAGTACTAGGACGACGAC
LOC_Os07g37320
Os.26932.1.S1_at--427--8111Chr07:22351530..22351554 (25 bp)
GGACGACGACGAAAAAGCAGTCACT
LOC_Os07g37320
Os.26932.1.S1_at--956--6691Chr07:22351473..22351497 (25 bp)
GTTCCGGTTTAATTTATCTGTGCCG
LOC_Os07g37320
Os.26932.1.S1_at--1057--6811Chr07:22351467..22351491 (25 bp)
GTTTAATTTATCTGTGCCGGATACT
LOC_Os07g37320
Target Sequence 
ATGCTCTGCCGCTTCAAGTTCATCCTCTTCTTCTTCTTCGGCGCGTGGGTGGTGATCATGACGCTGTTCGTCGCCTTCTT
CCTGCCGGAGACCAAGAACGTGCCCATCGAGGAGATGGTGCTCGTCTGGAAGTCGCACTGGTACTGGGGCAGGTTCATCC
GCGACGAGGACGTGCACGTCGGCGCCGACGTCGAGATGCCCGCCGCCGGCAACCGCAACGGCAAGGTCGACCCGGCCAAG
CTCGCCAACTGATGACCTCAGCGCGTCGGTCGCTGACATCGTTCGCAAATAAGCTACCATTAAAAAAAATCTTATATTTC
TTTTTTCTCATTTTTCTGTATTATACCCNAATTGTCTTAGTACTAGGACGACGACGAAAAAGCAGTCACTNGTCTCTCNT
TCGTTTTCTTTTCATTTTTAAAGTTCCGGTTTAATTTATCTGTGCCGGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis