Browse Element(s) Details


Os.26940.1.S1_at

Description gb:AY327043.1
DB_XREF= gi:32966062
TID=Os.26940.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26940 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ATPase ATP1 mRNA, complete cds.
PROD=putative ATPase ATP1
FL= gb:AY327043.1 gb:AK059564.1 gb:AK069248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4900011/11Katanin p60 ATPase-containing subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48970OsAffx.23720.1.S1_at10/111+28436506..28440607hypothetical protein
LOC_Os01g48980Os.17811.1.S1_at11/111+28444944..28450141GPI transamidase component family protein, putative, expressed
LOC_Os01g48990Os.7712.1.S1_a_at11/111+28453423..28457125Kinase C630.09c, putative, expressed
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0019538biological_processprotein metabolism
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26940.1.S1_at--63--10111Chr01:28468447..28468471 (25 bp)
TATGGTTCTGGCAGCTACCAACTTT
LOC_Os01g49000
Os.26940.1.S1_at--508--2991Chr01:28469642..28469666 (25 bp)
AATGTTTGCCGTGATGCTTCAATGA
LOC_Os01g49000
Os.26940.1.S1_at--379--10731Chr01:28469685..28469709 (25 bp)
TTGCAGGCAAGACCCGCGATGAGAT
LOC_Os01g49000
Os.26940.1.S1_at--462--1391Chr01:28469740..28469764 (25 bp)
AGACCCAGTGGCCATGTGTGACTTT
LOC_Os01g49000
Os.26940.1.S1_at--92--10751Chr01:28469763..28469787 (25 bp)
TTGAGGAAGCTCTGGCCAAGGTTCA
LOC_Os01g49000
Os.26940.1.S1_at--944--5351Chr01:28469788..28469812 (25 bp)
GAAGAGTGTATCACCCGCTGATATA
LOC_Os01g49000
Os.26940.1.S1_at--190--1171Chr01:28469838..28469862 (25 bp)
AGTTTGGGTCCGCTTGAAATCTCCA
LOC_Os01g49000
Os.26940.1.S1_at--621--71Chr01:28469862..28469886 (25 bp)
ATTCTGTTCCCGTTCAAATTTCTCA
LOC_Os01g49000
Os.26940.1.S1_at--404--1271Chr01:28469886..28469910 (25 bp)
AGATCATTGTTTCTCCTTGGTTGCT
LOC_Os01g49000
Os.26940.1.S1_at--142--6991Chr01:28469937..28469961 (25 bp)
GTACCGCTGTTATGTTGTTTCAACG
LOC_Os01g49000
Os.26940.1.S1_at--1033--1931Chr01:28469959..28469983 (25 bp)
ACGGCCTTATGTTGATCGGTTGTAT
LOC_Os01g49000
Target Sequence 
TATGGTTCTGGCAGCTACCAACTTTCCATGGGATATTGATGAAGCACTGAGACGGAGGCTGGAGAAGCGTATTTATATTC
CACTTCCAAATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGGTTGCTACCGATGTTGACATA
GATGAAGTTGCACGGAGGACAGAAGGCTATAGTGGTGACGACCTTACAAATGTTTGCCGTGATGCTTCAATGAATGGCAT
GAGACGAAAGATTGCAGGCAAGACCCGCGATGAGATTAAGAACATGTCAAAAGATGAGATCTCAAAAGACCCAGTGGCCA
TGTGTGACTTTGAGGAAGCTCTGGCCAAGGTTCAGAAGAGTGTATCACCCGCTGATATAGAAAAGCACGAGAAGTGGCAG
GCCGAGTTTGGGTCCGCTTGAAATCTCCATTCTGTTCCCGTTCAAATTTCTCAGATCATTGTTTCTCCTTGGTTGCTTGT
GTTCGCAAGTATTTCATTCATTTGTACCGCTGTTATGTTGTTTCAACGGCCTTATGTTGATCGGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis