Browse Element(s) Details


Os.26999.1.A1_at

Description gb:CB628284
DB_XREF= gi:29623273
DB_XREF=OSIIEb03M04.r
CLONE=OSIIEb03M04
TID=Os.26999.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26999 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g151303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g453902/11transposon protein, putative, unclassified
LOC_Os12g198702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g063602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g147602/11hypothetical protein
LOC_Os02g376542/11Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os11g355101/11retrotransposon protein, putative, LINE subclass
LOC_Os06g175301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g138901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15100OsAffx.31069.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15100Os.53479.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15110NANA8+9148450..9149215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15120NANA8+9149954..9154445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.26999.1.A1_at3/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130OsAffx.15708.1.S1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.49936.2.A1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26999.1.A1_at--666--26124Chr12:7583680..7583783 (25 bp)
AACCGACCTGAACTACAGTGCATTG
NONE
Os.26999.1.A1_at--366--54783Chr12:13855228..13855252 (25 bp)
GAACTACAGTGCATTGGGTCGATTT
NONE
Os.26999.1.A1_at--360--34552Chr11:7027817..7027841 (25 bp)
CAGTGCATTGGGTCGATTTATTAGG
NONE
Os.26999.1.A1_at--769--75101Chr12:13438480..13438504 (25 bp)
ATGTCACCGCGTCATCATGTGCCCA
NONE
Os.26999.1.A1_at--1084--179113Chr12:13438485..13438509 (25 bp)
ACCGCGTCATCATGTGCCCATGATG
NONE
Os.26999.1.A1_at--149--717Chr12:13438504..13438524 (21 bp)
ATGATGCACACGTCACCATGTTGAG
NONE
Os.26999.1.A1_at--476--3331NONE
CACTCCTACTTGTGGTAAGCACTGT
NONE
Os.26999.1.A1_at--447--923278Chr12:1798392..1798416 (25 bp)
TCCTTAATTGCCATGGGTGCGACTC
NONE
Os.26999.1.A1_at--348--7116Chr12:1798398..1798422 (25 bp)
ATTGCCATGGGTGCGACTCGCAAAA
NONE
Os.26999.1.A1_at--187--16513Chr12:5106335..5106358 (24 bp)
AGCCCACCATTCAGTCACATTTTAG
NONE
Os.26999.1.A1_at--527--35915Chr12:7584285..7584304 (20 bp)
CATTCAGTCACATTTTAGTTGGATA
NONE
Target Sequence 
AACCGACCTGAACTACAGTGCATTGGGTCGATTTATTAGGGGTGAGACTAATCACGGTGAATCTGGTCGATCGCCCATAA
CCGCGGGCACGGCTATTCGAATAGTTTTACTCTGGCCAGAGGTGCACAACTGTACCCACAAAACACAATCCACCAGCATG
TCACCGCGTCATCATGTGCCCATGATGCACACGTCACCATGTTGAGTGATTGTGACAAGACCCTTCATATAATCCTCCCC
TAACCATCCACACCACGCTAAGGTTTCAGCCCCACTCCTCGCAAGGCAGCGGGCAGTCCCCTCGTGCGCCGCGGTGAATC
CGGTAGCTGGACAACCGGACACCCCGGCCGACCCAACTCCATCACGCCTACCCTCGCCACCGGTGACTAGGAAAGGATCG
AGCTATACTTCAGATCAAGCAGTTACCCACTCCTACTTGTGGTAAGCACTGTAAGTCTTCCAGGGTTTCCCATGAACCGG
TCCTTAATTGCCATGGGTGCGACTCGCAAAACCATGCACCCACAGCCCACCATTCAGTCACATTTTAGTTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26999.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis