Browse Element(s) Details


Os.27098.4.S1_x_at

Description gb:NM_185880.1
DB_XREF= gi:34898845
GEN=OJ1058_A12.21
TID=Os.27098.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.13 (P0452F10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1058_A12.21 (OJ1058_A12.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3526011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35210OsAffx.25936.7.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.1.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.2.S1_x_at4/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.5.S1_x_at2/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35220NANA7+21082008..21082223hypothetical protein
LOC_Os07g35230Os.19439.2.S1_at11/117+21082887..21084877transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35230OsAffx.17922.1.S1_x_at5/117+21082887..21084877transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35240Os.10827.1.S1_x_at11/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35240Os.46055.2.S1_x_at5/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35250OsAffx.8939.1.S1_x_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.8939.1.S1_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.16289.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.1436.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35260Os.27098.4.S1_x_at11/117+21102826..21107979Protein kinase domain containing protein, expressed
LOC_Os07g35270NANA7+21110048..21111103transposon protein, putative, unclassified
LOC_Os07g35280Os.10444.1.S1_at11/117+21114625..21119305Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27098.4.S1_x_at--863--7071Chr07:21107334..21107358 (25 bp)
GTCACGAACCGTGTTGTCGGAACAT
LOC_Os07g35260
Os.27098.4.S1_x_at--616--331Chr07:21107445..21107469 (25 bp)
ATACATGGCCCCTGAGTACGCTATG
LOC_Os07g35260
Os.27098.4.S1_x_at--378--3431Chr07:21107492..21107516 (25 bp)
CAGATGTTTTCAGCTTTGGCGTTCT
LOC_Os07g35260
Os.27098.4.S1_x_at--264--5952Chr07:21107566..21107590 (25 bp)
GAGCAATCGGTTGATCTCTTAACTT
LOC_Os07g35260
Os.27098.4.S1_x_at--1160--1711Chr07:21107768..21107792 (25 bp)
ACCAGATCTTGAAGTGCGTCCACAT
LOC_Os07g35260
Os.27098.4.S1_x_at--113--3551Chr07:21107790..21107814 (25 bp)
CATCGGACTCCTGTGTGTTCAAGAA
LOC_Os07g35260
Os.27098.4.S1_x_at--251--5371Chr07:21107812..21107836 (25 bp)
GAAGACCCCACGGAGAGGCCAATGA
LOC_Os07g35260
Os.27098.4.S1_x_at--707--10451Chr07:21107858..21107882 (25 bp)
TTAGCAGCAGCACCGTGTCTTTACA
LOC_Os07g35260
Os.27098.4.S1_x_at--29--7451Chr07:21107872..21107896 (25 bp)
GTGTCTTTACAAGCTCCATCTAGGC
LOC_Os07g35260
Os.27098.4.S1_x_at--196--3711Chr07:21107891..21107915 (25 bp)
CTAGGCCGGCATTTTGCATCCAAAA
LOC_Os07g35260
Os.27098.4.S1_x_at--184--7451Chr07:21107921..21107945 (25 bp)
GTGTCAACTCAGATTCGTACTCGGA
LOC_Os07g35260
Target Sequence 
GTCACGAACCGTGTTGTCGGAACATATGGATACATGGCCCCTGAGTACGCTATGCGCGGGCATTACTCCATCAAATCAGA
TGTTTTCAGCTTTGGCGTTCTGATTTTAGAAATCGTCACGGGAAGGAAAAACAATGTCTCCTACGACTCCGAGCAATCGG
TTGATCTCTTAACTTTAGTGTGGGAGCACTGGTTGGCAGGAACAGTTGTGGAGCTTGCGGATTCATCCATGGCGGGGCAT
TGTCCTGGAGACCAGATCTTGAAGTGCGTCCACATCGGACTCCTGTGTGTTCAAGAAGACCCCACGGAGAGGCCAATGAT
GTCGATGGTGAATGTGATGCTTAGCAGCAGCACCGTGTCTTTACAAGCTCCATCTAGGCCGGCATTTTGCATCCAAAAGA
GTAGTGTCAACTCAGATTCGTACTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27098.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis