Browse Element(s) Details


Os.27105.1.S2_s_at

Description gb:AK072376.1
DB_XREF= gi:32982399
TID=Os.27105.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074A03, full insert sequence.
FL= gb:AK108433.1 gb:AK072376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4404011/11transposase protein, putative, expressed
LOC_Os11g263509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein
LOC_Os12g44060Os.9556.1.S1_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44060Os.9556.1.S2_at11/1112+27291162..27293894nodulin family protein, putative, expressed
LOC_Os12g44070Os.56205.1.S1_at11/1112+27296483..27298336nodulin family protein, putative, expressed
LOC_Os12g44080OsAffx.32183.1.S1_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44080OsAffx.32183.1.S1_s_at11/1112+27302494..27304149CHCH domain containing protein, expressed
LOC_Os12g44090Os.23212.1.S1_at11/1112+27306635..27310516leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27105.1.S2_s_at--663--3012Chr12:27281340..27281364 (25 bp)
AATGCTACGGGAGGATATTCTCAAA
LOC_Os12g44040
Os.27105.1.S2_s_at--885--9692Chr12:27281360..27281384 (25 bp)
TCAAAATGATTACTACGCAAAGCGT
LOC_Os12g44040
Os.27105.1.S2_s_at--482--5132Chr12:27281376..27281400 (25 bp)
GCAAAGCGTAGCATCGGAACAACAG
LOC_Os12g44040
Os.27105.1.S2_s_at--734--8153Chr12:27281391..27281515 (25 bp)
GGAACAACAGTCTGATCTGGCAATA
LOC_Os12g44040
Os.27105.1.S2_s_at--215--8232Chr12:27281509..27281533 (25 bp)
GGCAATAGATTGTCCAACTGAGAAT
LOC_Os12g44040
Os.27105.1.S2_s_at--682--10032Chr12:27281533..27281557 (25 bp)
TAGAGAACCACATGACACAACAAAG
LOC_Os12g44040
Os.27105.1.S2_s_at--895--2732Chr12:27281555..27281579 (25 bp)
AAGAAGGCTCGAAGCATTCAGAACA
LOC_Os12g44040
Os.27105.1.S2_s_at--99--5571Chr12:27281590..27281614 (25 bp)
GAAAGCACTTTTTAACAGCGCTAAT
LOC_Os12g44040
Os.27105.1.S2_s_at--887--2151Chr12:27281604..27281628 (25 bp)
ACAGCGCTAATTTGCAAGGAACAAC
LOC_Os12g44040
Os.27105.1.S2_s_at--59--8752Chr12:27281674..27281698 (25 bp)
TGCTAGAAATTTTGTACGGTCCCGA
LOC_Os12g44040
Os.27105.1.S2_s_at--1006--7792Chr12:27281691..27281848 (25 bp)
GGTCCCGAACTGATCAGGCCAGAGG
LOC_Os12g44040
Target Sequence 
AATGCTACGGGAGGATATTCTCAAAATGATTACTACGCAAAGCGTAGCATCGGAACAACAGTCTGATCTGGCAATAGATT
GTCCAACTGAGAATAGAGAACCACATGACACAACAAAGAAGGCTCGAAGCATTCAGAACAACACAGTTGTGAAAGCACTT
TTTAACAGCGCTAATTTGCAAGGAACAACAAGTACTACCCGGCAAAATATTTCTTCACAACATCTTAGGAATGTTGCTAG
AAATTTTGTACGGTCCCGAACTGATCAGGCCAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27105.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis