Browse Element(s) Details


Os.27109.1.S1_at

Description gb:AK110058.1
DB_XREF= gi:32995267
TID=Os.27109.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0038C05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-160-D07, full insert sequence.
FL= gb:AK110058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1641011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16400Os.32526.2.S1_x_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.47378.1.S1_s_at11/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16400Os.32526.1.S1_at7/116+9363071..9366998Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g16410Os.27109.1.S1_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16410Os.27109.2.S1_x_at11/116+9367200..9370952U-box domain containing protein, expressed
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27109.1.S1_at--261--9291Chr06:9367535..9367559 (25 bp)
TCCGTCGAGTTGTAGCATATCATCT
LOC_Os06g16410
Os.27109.1.S1_at--357--1251Chr06:9367528..9367552 (25 bp)
AGTTGTAGCATATCATCTTCATCTT
LOC_Os06g16410
Os.27109.1.S1_at--451--10551Chr06:9367505..9367529 (25 bp)
TTCATCTCCATAGTTTCTTGCCATG
LOC_Os06g16410
Os.27109.1.S1_at--450--4331Chr06:9367485..9367509 (25 bp)
CCATGTTCTTGGCTGTAACTACTAG
LOC_Os06g16410
Os.27109.1.S1_at--742--5471Chr06:9367461..9367485 (25 bp)
GAACTACATCATATGGGCTTGGTGT
LOC_Os06g16410
Os.27109.1.S1_at--523--8291Chr06:9367446..9367470 (25 bp)
GGCTTGGTGTATTTGGTTTGGTCTT
LOC_Os06g16410
Os.27109.1.S1_at--311--7871Chr06:9367432..9367456 (25 bp)
GGTTTGGTCTTGTAACTATACTGAA
LOC_Os06g16410
Os.27109.1.S1_at--609--1971Chr06:9367369..9367393 (25 bp)
ACTGCAGATGCAATGTAGCTAGTAC
LOC_Os06g16410
Os.27109.1.S1_at--250--6551Chr06:9367324..9367348 (25 bp)
GATTATATGCTCTTTGACATAGGTA
LOC_Os06g16410
Os.27109.1.S1_at--843--5671Chr06:9367309..9367333 (25 bp)
GACATAGGTAGTAGTTTCTTTTTCT
LOC_Os06g16410
Os.27109.1.S1_at--315--3171Chr06:9367259..9367283 (25 bp)
AATTGTCTTTTGTGGATTGGTGTTT
LOC_Os06g16410
Target Sequence 
TCCGTCGAGTTGTAGCATATCATCTTCATCTTCATCTCCATAGTTTCTTGCCATGTTCTTGGCTGTAACTACTAGAACTA
CATCATATGGGCTTGGTGTATTTGGTTTGGTCTTGTAACTATACTGAACAAGTTCACAGGGAAAAGAGAAGAAGAAAAGA
AAGAACACTGCAGATGCAATGTAGCTAGTACATGTTGTTATAGCAGGGGAAGATTATATGCTCTTTGACATAGGTAGTAG
TTTCTTTTTCTTCNATGTATGTATAATTTGTTTCAGAAATTGTCTTTTGTGGATTGGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis