Browse Element(s) Details


Os.27173.1.A1_x_at

Description gb:AK068285.1
DB_XREF= gi:32978303
TID=Os.27173.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149N22, full insert sequence.
FL= gb:AK068285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1071011/11ENT domain containing protein, expressed
LOC_Os03g062001/11Phosphoserine aminotransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10660OsAffx.17637.1.S1_at11/119+5816870..5818446hypothetical protein
LOC_Os09g10670OsAffx.29796.1.S1_at11/119+5819495..5819982hypothetical protein
LOC_Os09g10680NANA9+5821784..5823771hypothetical protein
LOC_Os09g10690OsAffx.17638.1.S1_at11/119+5825195..5826019expressed protein
LOC_Os09g10700NANA9+5828396..5830641hypothetical protein
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0004648molecular_functionphosphoserine transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27173.1.A1_x_at--1043--8072Chr03:3091628..3091647 (20 bp)
GGAGCTAACTTTCGTGATGCTGCTT
LOC_Os03g06200
Os.27173.1.A1_x_at--1136--6331Chr09:5836843..5836867 (25 bp)
GATGCTGCTTTTTTATGTTGCTAAG
LOC_Os09g10710
Os.27173.1.A1_x_at--965--3511Chr09:5836804..5836828 (25 bp)
CATGTTTTGCATGCGTGTTGGTCAA
LOC_Os09g10710
Os.27173.1.A1_x_at--1023--5591Chr09:5836772..5836796 (25 bp)
GAAATTTGCTCCAGGATTTGTGCAT
LOC_Os09g10710
Os.27173.1.A1_x_at--259--1031Chr09:5836716..5836740 (25 bp)
AGGTACCCTCTCATGGTCATGCGAA
LOC_Os09g10710
Os.27173.1.A1_x_at--923--3151Chr09:5836607..5836631 (25 bp)
AATTCCCTATAGACGTGTGACTTCA
LOC_Os09g10710
Os.27173.1.A1_x_at--547--7371Chr09:5836591..5836615 (25 bp)
GTGACTTCATTTTAACATACTCCCT
LOC_Os09g10710
Os.27173.1.A1_x_at--894--4431Chr09:5836526..5836550 (25 bp)
GCCTTTGGCTTGTGCATTTACTACT
LOC_Os09g10710
Os.27173.1.A1_x_at--158--411Chr09:5836466..5836490 (25 bp)
ATCAGAGCTCTTGCATGAATGGACA
LOC_Os09g10710
Os.27173.1.A1_x_at--1010--5571Chr09:5836440..5836464 (25 bp)
GAAATCCATCGGCTATTGTTCAATG
LOC_Os09g10710
Os.27173.1.A1_x_at--290--5211Chr09:5836378..5836402 (25 bp)
GAATTCTCGCCCAAAATAACAGTAT
LOC_Os09g10710
Target Sequence 
GGAGCTAACTTTCGTGATGCTGCTTTTTTATGTTGCTAAGTTAATGGATAATCTCATGTTTTGCATGCGTGTTGGTCAAC
AAAAAAGAAATTTGCTCCAGGATTTGTGCATTGTANTAACATTTNCAATATTTGGTAATACGAGGTACCCTCTCATGGTC
ATGCGAACCTTTGGAAGTTTATGGTGCACTTACTTGAAAACAATAATTTTTTATCTACAAAATAATCCAAACAAAATACT
AAAAATAACTCAATTCCCTATAGACGTGTGACTTCATTTTAACATACTCCCTCCATCCCATAATATAAGGGATTATATAT
AGGGTATATTATGCCTTTGGCTTGTGCATTTACTACTTGAATTCGTATTCAAGTTGTTACTNTACAGAAACAATCAGAGC
TCTTGCATGAATGGACATGAAATCCATCGGCTATTGTTCAATGCTGCTAATAGAAAATAACTAATGTAGAAAATAGTAGA
GAATTCTCGCCCAAAATAACAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27173.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis