Browse Element(s) Details


Os.27188.1.S1_at

Description gb:AK073503.1
DB_XREF= gi:32983526
TID=Os.27188.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0463A02.24 (P0463A02.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046K19, full insert sequence.
FL= gb:AK073503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2498011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative
LOC_Os01g24970OsAffx.11197.1.S1_at11/111+14058802..14059101hypothetical protein
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g24990OsAffx.23379.1.S1_at11/111+14068315..14069516hypothetical protein
LOC_Os01g25000OsAffx.23380.1.S1_at11/111+14080143..14081268hypothetical protein
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27188.1.S1_at--857--1371Chr01:14062591..14062615 (25 bp)
AGAGCGGCTGTCTATAGCAGCCTTC
LOC_Os01g24980
Os.27188.1.S1_at--529--2871Chr01:14062624..14062648 (25 bp)
AAGTGTCCATGCTGTCATTGGTCCT
LOC_Os01g24980
Os.27188.1.S1_at--398--8771Chr01:14062681..14062705 (25 bp)
TGTTTACAGGAGCATAGGCCATGAT
LOC_Os01g24980
Os.27188.1.S1_at--1041--9371Chr01:14062816..14062840 (25 bp)
TCGAGTGATCGACAAGCATCCTGTT
LOC_Os01g24980
Os.27188.1.S1_at--793--2711Chr01:14062829..14062853 (25 bp)
AAGCATCCTGTTGTGCTTGCTGGCA
LOC_Os01g24980
Os.27188.1.S1_at--105--7271Chr01:14062894..14062918 (25 bp)
GTCCAACTCCAAGGTAAGTACTTAG
LOC_Os01g24980
Os.27188.1.S1_at--395--5451Chr01:14062918..14062942 (25 bp)
GAACCCATTGTAGTCTCTATTCATA
LOC_Os01g24980
Os.27188.1.S1_at--957--9471Chr01:14062951..14062975 (25 bp)
TCATCCTTGAGAGAGTACGTAGAAC
LOC_Os01g24980
Os.27188.1.S1_at--804--9911Chr01:14062966..14062990 (25 bp)
TACGTAGAACCCATTGTAGCCATCC
LOC_Os01g24980
Os.27188.1.S1_at--70--5591Chr01:14063002..14063026 (25 bp)
GAAATGGCTGCAACTCTGTAACAGT
LOC_Os01g24980
Os.27188.1.S1_at--238--871Chr01:14063122..14063146 (25 bp)
ATGGCCAATGATATTCATACCTCAA
LOC_Os01g24980
Target Sequence 
AGAGCGGCTGTCTATAGCAGCCTTCCATTCTCCAAGTGTCCATGCTGTCATTGGTCCTCTGAAGGAGATGGTGGCGCATG
AACATGAGGCTGTTTACAGGAGCATAGGCCATGATGAGTTTATGAAGCTCTTCTTCTCCTCCAAGCTGGAGGGGAAGAGC
TTCTTGGACAGGATGAAGAAGCTCTAAATCAAANCTGAGAGTAAGATCAGTGACAGAGAATCAGATCGAGTGATCGACAA
GCATCCTGTTGTGCTTGCTGGCATTCGNTGAGGTATTGGACTTGAGGGCAAAGGATGCAAGGGGTCCAACTCCAAGGTAA
GTACTTAGAACCCATTGTAGTCTCTATTCATATCATTGTATCATCCTTGAGAGAGTACGTAGAACCCATTGTAGCCATCC
NTGTGCTTGTTGAAATGGCTGCAACTCTGTAACAGTGGAAGATTCAGGCACACAAAAATTTCAGACAAATGTTCGTAAGA
TATCTGTAGGGATCAGATAGAATTGTTGATGGTCTTCAGATTGTTTTTTTTATGGCCAATGATATTCATACCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis