Browse Element(s) Details


Os.27198.1.S1_at

Description gb:AK059595.1
DB_XREF= gi:32969613
TID=Os.27198.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D10, full insert sequence.
FL= gb:AK059595.1 gb:AK106194.1 gb:AK061146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1569011/11glycoside hydrolase family 28 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15660OsAffx.24269.1.S1_at11/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15660Os.17360.1.A1_at10/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15670NANA2+8824992..8825378expressed protein
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27198.1.S1_at--898--9631Chr02:8836899..8836923 (25 bp)
TCAGGAACATCACCGTTGACAACGT
LOC_Os02g15690
Os.27198.1.S1_at--20--8971Chr02:8836915..8836939 (25 bp)
TGACAACGTCCGCATGAACAGCGTC
LOC_Os02g15690
Os.27198.1.S1_at--718--7371Chr02:8836971..8836995 (25 bp)
GTGACCACCCAGATGAGCACTTCAG
LOC_Os02g15690
Os.27198.1.S1_at--57--631Chr02:8837019..8837043 (25 bp)
ATGCTGTCAGCATCAAGAACGTGTG
LOC_Os02g15690
Os.27198.1.S1_at--337--951Chr02:8837084..8837108 (25 bp)
AGGAACTCGCCGTTCACGAGGATAT
LOC_Os02g15690
Os.27198.1.S1_at--29--6171Chr02:8837101..8837125 (25 bp)
GAGGATATGCCTCGCCAACGTGAAG
LOC_Os02g15690
Os.27198.1.S1_at--1069--10311Chr02:8837226..8837250 (25 bp)
TTTCTTCAGGGTTCTGCAGCTATTA
LOC_Os02g15690
Os.27198.1.S1_at--93--5071Chr02:8837241..8837265 (25 bp)
GCAGCTATTAGTGTGATCCAGTTGT
LOC_Os02g15690
Os.27198.1.S1_at--935--10751Chr02:8837312..8837336 (25 bp)
TTGACTGCTCCCTAATTGTGGTTGG
LOC_Os02g15690
Os.27198.1.S1_at--641--10851Chr02:8837407..8837431 (25 bp)
TTGGCTTCTAAGTTGTCAGTCTGAG
LOC_Os02g15690
Os.27198.1.S1_at--393--9011Chr02:8837450..8837474 (25 bp)
TGAATAATAAATCCCAGCTTGTGTG
LOC_Os02g15690
Target Sequence 
TCAGGAACATCACCGTTGACAACGTCCGCATGAACAGCGTCCGCAACGGGCTGCGCATCGCCGGCGATGTCGGTGACCAC
CCAGATGAGCACTTCAGCCAGCTCGCGCTGCCCACCGTGGATGCTGTCAGCATCAAGAACGTGTGGGGTGTCAATGTGCA
GCAGCCCGGGTCGATCGAGGGGATCAGGAACTCGCCGTTCACGAGGATATGCCTCGCCAACGTGAAGCTGTTTGGGTGGA
GGAATAATGCAGCTTGGAAGTGCAGGGACGTCCATGGCGCGGCGCTGGGTGTGCAGCCGGGGCCGTGTGCAGAGCTCACG
ACCAGCCTTTCTTCAGGGTTCTGCAGCTATTAGTGTGATCCAGTTGTATAATGTTTTTTGATTAGAAAGGTTGTGCTTGC
TTTTTTTTTAGGTTTGACTGCTCCCTAATTGTGGTTGGGATTGATCAATATGTTAGGCTTGTGCTAATCAGTTAAGGAGT
TTTAGGTGTCTTTTTGTTAGAGAAAGGTTTGGCTTCTAAGTTGTCAGTCTGAGTGCAAATATGTTCTAATCTGAATAATA
AATCCCAGCTTGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis