Browse Element(s) Details


Os.27292.1.A1_at

Description gb:AK109806.1
DB_XREF= gi:32995015
TID=Os.27292.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F12, full insert sequence.
FL= gb:AK109806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4435410/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein
LOC_Os04g44320Os.10860.2.S1_at4/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44320Os.50465.1.S1_x_at1/114+26028709..26032899transposon protein, putative, unclassified, expressed
LOC_Os04g44330OsAffx.26458.1.S1_at11/114+26034738..26037698transposon protein, putative, unclassified, expressed
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
LOC_Os04g44410Os.54573.1.S1_at11/114+26068479..26073053Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27292.1.A1_at--916--9731Chr04:26041813..26041837 (25 bp)
TCAATTGCGCGTACATCACCAGGGT
LOC_Os04g44354
Os.27292.1.A1_at--258--5771Chr04:26041751..26041775 (25 bp)
GACGTCGTACGTGACTGCATCGAGA
LOC_Os04g44354
Os.27292.1.A1_at--894--5411Chr04:26041629..26041653 (25 bp)
GAACCTCAGGTCTTTCGTCAACGAA
LOC_Os04g44354
Os.27292.1.A1_at--50--5991Chr04:26041597..26041621 (25 bp)
GAGACCACCCGTTGTTGACGCAGAT
LOC_Os04g44354
Os.27292.1.A1_at--672--891Chr04:26041532..26041556 (25 bp)
AGGCCCGCAGGTGCATGTACATTAT
LOC_Os04g44354
Os.27292.1.A1_at--330--51Chr04:26041490..26041514 (25 bp)
ATTGTTAGTATCTTTCTCGTCACCG
LOC_Os04g44354
Os.27292.1.A1_at--905--9391Chr04:26041474..26041498 (25 bp)
TCGTCACCGGTTAAGTGCCTGTTGA
LOC_Os04g44354
Os.27292.1.A1_at--276--7291Chr04:26041460..26041484 (25 bp)
GTGCCTGTTGAAATGCGTACCTTAG
LOC_Os04g44354
Os.27292.1.A1_at--161--9931Chr04:26041424..26041448 (25 bp)
TACTGTATCAAAGAATGCGCGCTCT
LOC_Os04g44354
Os.27292.1.A1_at--453--611Chr04:26041410..26041434 (25 bp)
ATGCGCGCTCTTATTGAAGGATCGA
LOC_Os04g44354
Os.27292.1.A1_at--669--10071Chr04:26041371..26041394 (24 bp)
TAGGTTCGGATTAGAGTTCGCCAAA
NONE
Target Sequence 
TCAATTGCGCGTACATCACCAGGGTCTGGGAGGTCGGGCTCAAGCTCGGCAGCGTGCGCCGCGACGTCGTACGTGACTGC
ATCGAGAGGATCATGGGAGGCGCGGAAGGGACGCGCCTGCAGGAGAAGATGGACGCGCTGAGGCAGAGAGCCGTGACGGC
CGAGGCCAGGTGCTTGGCGCAGGGGAACCTCAGGTCTTTCGTCAACGAAATCAAGAGAGACCACCCGTTGTTGACGCAGA
TTTACAACATATTGTAGGATCGGTATTATATATGCTTGGGCAGGCCCGCAGGTGCATGTACATTATTAGATGTACAATTG
TACATTGTTAGTATCTTTCTCGTCACCGGTTAAGTGCCTGTTGAAATGCGTACCTTAGTAATCTAGTGGTACTGTATCAA
AGAATGCGCGCTCTTATTGAAGGATCGAAGTTAATTCAATGGTTAGGTTCGGATTAGAGTTCGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27292.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis