Browse Element(s) Details

Os.27347.1.S1_a_at

Description

gb:AK120108.1
DB_XREF= gi:37989731
TID=Os.27347.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.12 (P0683F02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023O16, full insert sequence.
FL= gb:AK120108.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g13770	11/11	expressed protein
LOC_Os07g27140	11/11	AT hook motif family protein
LOC_Os12g39650	4/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g13720	Os.10452.1.S1_at	11/11	3	+	7409707..7412707	expressed protein
LOC_Os03g13730	OsAffx.3231.1.S1_at	11/11	3	+	7413096..7417135	Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730	Os.8640.1.S1_at	11/11	3	+	7413096..7417135	Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730	OsAffx.28716.1.S1_s_at	1/11	3	+	7413096..7417135	Translocase of chloroplast 34, putative, expressed
LOC_Os03g13740	Os.6244.1.S1_x_at	11/11	3	+	7419455..7421070	U-box domain containing protein, expressed
LOC_Os03g13740	Os.6244.1.S1_at	11/11	3	+	7419455..7421070	U-box domain containing protein, expressed
LOC_Os03g13750	Os.10466.1.S1_at	10/11	3	+	7425053..7428664	expressed protein
LOC_Os03g13750	OsAffx.12845.1.S1_at	9/11	3	+	7425053..7428664	expressed protein
LOC_Os03g13760	Os.18639.1.S1_at	11/11	3	+	7428850..7432091	Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770	Os.27347.1.S1_a_at	11/11	3	+	7432674..7436825	expressed protein
LOC_Os03g13780	Os.35344.18.S1_x_at	9/11	3	+	7437731..7443905	transposon protein, putative, Mutator sub-class
LOC_Os03g13780	Os.35344.3.S1_x_at	9/11	3	+	7437731..7443905	transposon protein, putative, Mutator sub-class
LOC_Os03g13780	OsAffx.22940.5.S1_x_at	3/11	3	+	7437731..7443905	transposon protein, putative, Mutator sub-class
LOC_Os03g13790	Os.14693.1.S2_at	11/11	3	+	7448669..7454495	myb family transcription factor, putative, expressed
LOC_Os03g13790	Os.14693.1.S1_at	11/11	3	+	7448669..7454495	myb family transcription factor, putative, expressed
LOC_Os03g13800	Os.12755.2.S1_s_at	10/11	3	+	7455335..7457261	NHP2-like protein 1, putative, expressed
LOC_Os03g13810	Os.13497.1.S2_at	11/11	3	+	7459432..7462341	expressed protein
LOC_Os03g13810	Os.13497.1.S1_at	11/11	3	+	7459432..7462341	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0003677	molecular_function	DNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27347.1.S1_a_at--1121--1067	3	Chr12:24447937..24447961 (25 bp)	TTCCATGCTAGTGCTGTTTGTGCTG	LOC_Os12g39650
Os.27347.1.S1_a_at--441--731	2	Chr07:15732291..15732315 (25 bp)	GTGCTGCAGCAATACATTCAATTAC	LOC_Os07g27140
Os.27347.1.S1_a_at--9--1003	2	Chr07:15732257..15732281 (25 bp)	TAGATTGCAACGAACGGGCCCGAGT	LOC_Os07g27140
Os.27347.1.S1_a_at--698--43	2	Chr07:15732207..15732231 (25 bp)	ATCTTGACATTGGTGAACTTCTGCA	LOC_Os07g27140
Os.27347.1.S1_a_at--1144--547	2	Chr07:15732193..15732217 (25 bp)	GAACTTCTGCACATTTTATCTGATC	LOC_Os07g27140
Os.27347.1.S1_a_at--917--991	3	Chr12:24448098..24448122 (25 bp)	TACTGCTCTGGATGTAGCGATGCCT	LOC_Os12g39650
Os.27347.1.S1_a_at--338--199	3	Chr12:24448262..24448286 (25 bp)	ACTCTTTGACCCCTGAAATCAGCGA	LOC_Os12g39650
Os.27347.1.S1_a_at--127--671	3	Chr12:24448661..24448685 (25 bp)	GTTCCCGTCAATCTTCAGAGGCAAC	LOC_Os12g39650
Os.27347.1.S1_a_at--1101--763	2	Chr07:15731347..15731371 (25 bp)	GGGAGATCCTTAGCGACCATGCAGA	LOC_Os07g27140
Os.27347.1.S1_a_at--753--337	2	Chr07:15731315..15731339 (25 bp)	CAGCCAAAGGGCTCACTCGATATTG	LOC_Os07g27140
Os.27347.1.S1_a_at--541--623	2	Chr07:15731280..15731304 (25 bp)	GATGGCGGCACGATTACGATCAAGC	LOC_Os07g27140

Target Sequence

TTCCATGCTAGTGCTGTTTGTGCTGCAGCAATACATTCAATTACTGTTCCATTTAGATTGCAACGAACGGGCCCGAGTTC
AGACTTAGCACATTCATCTGGTAATCTTGACATTGGTGAACTTCTGCACATTTTATCTGATCAAGGTCGGCAGAATATGG
TTACTGCTCTGGATGTAGCGATGCCTGCCCCTTCTTTGACAGATAGAGATGCTATTGGGGAACATAGAGATGAAGCTGCA
CTCTTTGACCCCTGAAATCAGCGACGAGGACGAAGATCCTTATTCAGTTGAATCGCTGGTGGTTCATGGAGCTCTTGATA
GAGGTGGGCAAAGGACTTCCATATCACAAGTGAAAGACTCGGTATGTTCAGTCTACGAAGCCAGAGAGACAAAGCCAAAA
TTTTCCCATCTCTCAGCATCTCTTTGCCCCCTCCCTGTCCCCCTTCCGTTCCCGTCAATCTTCAGAGGCAACATTGGCCG
GCACGGGGAGATCCTTAGCGACCATGCAGAAGAATCCCAGCCAAAGGGCTCACTCGATATTGAATCGATACCGATGGCGG
CACGATTACGATCAAGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis