Browse Element(s) Details


Os.27388.1.S1_s_at

Description gb:AK060176.1
DB_XREF= gi:32970194
TID=Os.27388.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A02, full insert sequence.
FL= gb:AK060176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0147011/11Homeobox-leucine zipper protein HAT22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein
LOC_Os10g01450OsAffx.442.1.S1_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.442.1.S1_x_at11/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_s_at10/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.30226.2.S1_x_at4/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01450OsAffx.19052.1.S1_at1/1110+252868..257026retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01460OsAffx.30227.1.S1_at11/1110+266298..266711hypothetical protein
LOC_Os10g01470Os.27388.1.S1_s_at11/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01470Os.49759.1.S1_x_at1/1110+268877..271094Homeobox-leucine zipper protein HAT22, putative, expressed
LOC_Os10g01480Os.46870.1.S1_at11/1110+285960..292214inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27388.1.S1_s_at--474--9851Chr10:269417..269441 (25 bp)
TAAATTAATCTCGATCATCATCCTC
LOC_Os10g01470
Os.27388.1.S1_s_at--1109--551Chr10:269398..269422 (25 bp)
ATCCTCTCCCTGCATATGCATGCTA
LOC_Os10g01470
Os.27388.1.S1_s_at--167--3831Chr10:269202..269226 (25 bp)
CTGCTTTAATTAGTTAGCTTCATTT
LOC_Os10g01470
Os.27388.1.S1_s_at--452--1991Chr10:269137..269161 (25 bp)
ACTGCCGGCCGCATCTAGGATCGAT
LOC_Os10g01470
Os.27388.1.S1_s_at--1011--8411Chr10:269131..269155 (25 bp)
GGCCGCATCTAGGATCGATCCAGAA
LOC_Os10g01470
Os.27388.1.S1_s_at--41--6631Chr10:269081..269105 (25 bp)
GTTGGTTTTGCTTGCATCTAGCTAT
LOC_Os10g01470
Os.27388.1.S1_s_at--305--3711Chr10:269064..269088 (25 bp)
CTAGCTATAGATGGTCACTTACTGG
LOC_Os10g01470
Os.27388.1.S1_s_at--837--8931Chr10:268995..269019 (25 bp)
TGACGACGACATGACACCTAGCTAG
LOC_Os10g01470
Os.27388.1.S1_s_at--106--4091Chr10:268992..269016 (25 bp)
CGACGACATGACACCTAGCTAGCTA
LOC_Os10g01470
Os.27388.1.S1_s_at--996--3871Chr10:268944..268968 (25 bp)
CTGTACTCTGTACGTGATCCATGTA
LOC_Os10g01470
Os.27388.1.S1_s_at--990--6991Chr10:268935..268959 (25 bp)
GTACGTGATCCATGTATTATATTGA
LOC_Os10g01470
Target Sequence 
TAAATTAATCTCGATCATCATCCTCTCCCTGCATATGCATGCTAGCATGATTAATTAATTAATCATCATATCAGNGTGTA
GTGTACATATATATAGTTTATAGTAGTACATATATTAATTCTTGCANGCATGCTTGCATNTAGTAGTAAATATATATGGC
TATAGCTAGTTAGCTCATNGATCAGCTGGNTCTNTCATGCANATGTTCACCCCCTCTGCTTTAATTAGTTAGCTTCATTT
TTTCNCAAGTTAATTAATGTGTGAGGAGGATGGNCTGAGCACTGCCGGCCGCATCTAGGATCGATCCAGAAATCAAACAA
AATTTTAATTCAAGTTGTTGGTTTTGCTTGCATCTAGCTATAGATGGTCACTTACTGGNGATGAATTTTATTGTCAGGGG
AGTTAAGAGTGTTGTAGTTAGATGACGACGACATGACACCTAGCTAGCTAGCTAGCTCACNCACATATATATACTGTACT
CTGTACGTGATCCATGTATTATATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27388.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis