Browse Element(s) Details


Os.27446.3.S1_x_at

Description gb:AK067436.1
DB_XREF= gi:32977454
TID=Os.27446.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101P10, full insert sequence.
FL= gb:AK067436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6258010/11Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g439001/11Down syndrome critical region protein 5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27446.3.S1_x_at--738--6651Chr03:35365017..35365041 (25 bp)
GTTGAAACTCAACTCACGTCGAGAT
LOC_Os03g62580
Os.27446.3.S1_x_at--657--3451Chr03:35365077..35365101 (25 bp)
CAGTAGCGTACTGTTCACATCTAAA
LOC_Os03g62580
Os.27446.3.S1_x_at--331--10412Chr03:35365148..35365172 (25 bp)
TTTTGGTAGACCGATAGATATCACT
LOC_Os03g62580
Os.27446.3.S1_x_at--178--6511Chr03:35365164..35365188 (25 bp)
GATATCACTATACTCTACGGTCTAC
LOC_Os03g62580
Os.27446.3.S1_x_at--332--5211NONE
GAATTCTTCGTAACTATTTATATCG
NONE
Os.27446.3.S1_x_at--991--5251Chr03:35365278..35365302 (25 bp)
GAATCCAATCCCTACTTATGGTTCA
LOC_Os03g62580
Os.27446.3.S1_x_at--726--5251Chr03:35365326..35365350 (25 bp)
GAATCTCGTATCATATGTACAGTTA
LOC_Os03g62580
Os.27446.3.S1_x_at--598--7431Chr03:35365359..35365383 (25 bp)
GTGTTTTTACCTTTATTCTGTACAG
LOC_Os03g62580
Os.27446.3.S1_x_at--164--6771Chr03:35365419..35365443 (25 bp)
GTTACTTGCTAATGTGACAATGCCT
LOC_Os03g62580
Os.27446.3.S1_x_at--1119--7651Chr03:35365486..35365510 (25 bp)
GGGATCTAATGGTCTTATGGTGTAA
LOC_Os03g62580
Os.27446.3.S1_x_at--131--231Chr03:35365540..35365564 (25 bp)
ATATTACTCTTATATGCCGCATTGT
LOC_Os03g62580
Target Sequence 
GTTGAAACTCAACTCACGTCGAGATATAAAAAAGGACAAATTCAACGTATGAACAGAGAACAGTAGCGTACTGTTCACAT
CTAAATTTATCTTTTTTGTTTCTCAATGTGTAGATCGAATTAGAACTTGATTTTTGGTAGACCGATAGATATCACTATAC
TCTACGGTCTACATTGTCAATTTTTTTCAGAATTCTTCGTAACTATTTATATCGAATTTGGAAGAAAAAGGTATACGAGG
GGACATCCCCTCGAGGGATTAGAATCCAATCCCTACTTATGGTTCAAGTTTTACAATCATAAATTTTATGAATCTCGTAT
CATATGTACAGTTAACATTAGGGTGTTTTTACCTTTATTCTGTACAGCTAAATTGGGTAACATTACTGATAAATTGCATT
TTGTTACTTGCTAATGTGACAATGCCTATTTTTTACAATGTAACTAGTATAGATGTTTGGTGTATTAATGGGATCTAATG
GTCTTATGGTGTAAATTTGATTGTTTCTGTTTGTTATTAGTTAATATTACTCTTATATGCCGCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27446.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis