Browse Element(s) Details


Os.27465.1.S1_at

Description gb:AK119594.1
DB_XREF= gi:37989217
TID=Os.27465.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D07, full insert sequence.
FL= gb:AK064068.1 gb:AK119594.1 gb:AK121731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1889011/11glycosyl transferase family 8 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed
LOC_Os03g18900NANA3+10570513..10571225expressed protein
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27465.1.S1_at--185--9951Chr03:10564451..10564475 (25 bp)
TACGAGCTCGGGTCGTTGCCGCCCT
LOC_Os03g18890
Os.27465.1.S1_at--451--9091Chr03:10564593..10564617 (25 bp)
TGCTGCATTGGTCCGGATCCGGCAA
LOC_Os03g18890
Os.27465.1.S1_at--1055--3571Chr03:10564598..10564622 (25 bp)
CATTGGTCCGGATCCGGCAAGCCGT
LOC_Os03g18890
Os.27465.1.S1_at--4--9291Chr03:10564715..10564739 (25 bp)
TCCCGGTAACCGCAACACTAAAGAT
LOC_Os03g18890
Os.27465.1.S1_at--255--7831Chr03:10564719..10564743 (25 bp)
GGTAACCGCAACACTAAAGATGATT
LOC_Os03g18890
Os.27465.1.S1_at--944--2791Chr03:10564735..10564759 (25 bp)
AAGATGATTCTTTTCCTTCTTTCGC
LOC_Os03g18890
Os.27465.1.S1_at--450--8831Chr03:10564739..10564763 (25 bp)
TGATTCTTTTCCTTCTTTCGCCGAC
LOC_Os03g18890
Os.27465.1.S1_at--866--8891Chr03:10564778..10564802 (25 bp)
TGAGTTCTCAATTCTTCTCCACCAT
LOC_Os03g18890
Os.27465.1.S1_at--43--3171Chr03:10564786..10564810 (25 bp)
CAATTCTTCTCCACCATTACCTGTT
LOC_Os03g18890
Os.27465.1.S1_at--396--8671Chr03:10564876..10564900 (25 bp)
TGTGTTAGATTGTTCTTGTTGGTAT
LOC_Os03g18890
Os.27465.1.S1_at--236--10791Chr03:10564885..10564909 (25 bp)
TTGTTCTTGTTGGTATTAGTGATCT
LOC_Os03g18890
Target Sequence 
TACGAGCTCGGGTCGTTGCCGCCCTTCCTGCTGGTGTTCGCGGGGCACGTGGCGCCGATCGAGCACCGGTGGAACCAGCA
CGGCCTCGGCGGCGACAACGTGTTCGGCAGCTGCCGCGACCTCCACCCGGGGCCGGTGAGCCTGCTGCATTGGTCCGGAT
CCGGCAAGCCGTGGGCGCGGCTCGGCGCCGGGCGGCCGTGCCCGCTCGACGCGCTCTGGGCGCCGTTCGACCTGTACGGC
CCGGCCGACTCCGCCGCGGAAGGGTCCCGGTAACCGCAACACTAAAGATGATTCTTTTCCTTCTTTCGCCGACCCCGTAC
AAATTTNTGAGTTCTCAATTCTTCTCCACCATTACCTGTTCAAACACCTACATGTTTATTTTTTCTTCATTTCTTCTTTC
TTTTGTTCTGTTCGATTAAATGCCTTGTGTTAGATTGTTCTTGTTGGTATTAGTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis