Browse Element(s) Details


Os.27509.1.S1_at

Description gb:CB642018
DB_XREF= gi:29637009
DB_XREF=OSJNEb01P15.r
CLONE=OSJNEb01P15
TID=Os.27509.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0638D12.14 (P0638D12.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5379011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53750Os.36264.1.S1_x_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53750Os.36264.1.S1_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53760OsAffx.2325.1.S1_at11/111+31229592..31229906hypothetical protein
LOC_Os01g53770Os.57329.1.S1_at10/111+31232433..31233107expressed protein
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27509.1.S1_at--647--3611Chr01:31248058..31248082 (25 bp)
CTTGTGAAAGTGATGGCCTGTGGCT
LOC_Os01g53790
Os.27509.1.S1_at--524--4731Chr01:31248080..31248104 (25 bp)
GCTGTTTTTAGTTTAGGCTGGGTCG
LOC_Os01g53790
Os.27509.1.S1_at--678--10331Chr01:31248086..31248110 (25 bp)
TTTAGTTTAGGCTGGGTCGGATCAC
LOC_Os01g53790
Os.27509.1.S1_at--126--6831Chr01:31248090..31248114 (25 bp)
GTTTAGGCTGGGTCGGATCACAAGA
LOC_Os01g53790
Os.27509.1.S1_at--291--10071Chr01:31248093..31248117 (25 bp)
TAGGCTGGGTCGGATCACAAGAAGA
LOC_Os01g53790
Os.27509.1.S1_at--978--371Chr01:31248106..31248130 (25 bp)
ATCACAAGAAGAGAAACGTATGCTC
LOC_Os01g53790
Os.27509.1.S1_at--792--1891Chr01:31248121..31248145 (25 bp)
ACGTATGCTCTATATTCTTTCCTCG
LOC_Os01g53790
Os.27509.1.S1_at--647--10131Chr01:31248124..31248148 (25 bp)
TATGCTCTATATTCTTTCCTCGCGA
LOC_Os01g53790
Os.27509.1.S1_at--1073--9071Chr01:31248126..31248150 (25 bp)
TGCTCTATATTCTTTCCTCGCGATA
LOC_Os01g53790
Os.27509.1.S1_at--318--9551Chr01:31248129..31248153 (25 bp)
TCTATATTCTTTCCTCGCGATATTC
LOC_Os01g53790
Os.27509.1.S1_at--574--231Chr01:31248132..31248156 (25 bp)
ATATTCTTTCCTCGCGATATTCTTT
LOC_Os01g53790
Target Sequence 
CTTGTGAAAGTGATGGCCTGTGGCTGTTTTTAGTTTAGGCTGGGTCGGATCACAAGAAGAGAAACGTATGCTCTATATTC
TTTCCTCGCGATATTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis