Browse Element(s) Details


Os.27569.3.S1_at

Description gb:AK072581.1
DB_XREF= gi:32982604
TID=Os.27569.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023130K21, full insert sequence.
FL= gb:AK072581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0269011/11expressed protein
LOC_Os12g026706/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g027204/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02660Os.10542.2.S1_at11/1112+905832..926897expressed protein
LOC_Os12g02640Os.47955.1.S1_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02640Os.47955.2.S1_x_at11/1112+911504..915531Cytochrome P450 family protein, expressed
LOC_Os12g02670Os.27569.3.S1_at6/1112+928791..933529retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02680Os.56293.1.S1_at10/1112+934256..936507expressed protein
LOC_Os12g02690Os.27569.3.S1_at11/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.4.S1_x_at5/1112+939852..943007expressed protein
LOC_Os12g02690Os.27569.1.S1_x_at4/1112+939852..943007expressed protein
LOC_Os12g02700Os.50992.1.S1_at11/1112+943441..944546Harpin-induced protein 1 containing protein, expressed
LOC_Os12g02710Os.54077.1.S1_at11/1112+946150..949199expressed protein
LOC_Os12g02720Os.53587.1.S1_at11/1112+953506..954644eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27569.3.S1_at--660--5412Chr12:942476..942500 (25 bp)
GAAGCTGTGAGACCCCTTCTTCAGA
LOC_Os12g02690
Os.27569.3.S1_at--568--5852Chr12:942499..942523 (25 bp)
GAGCCTCTACTTACAGGCATTGCAG
LOC_Os12g02690
Os.27569.3.S1_at--450--8872Chr12:942545..942569 (25 bp)
TGAGGCGACCTCTTAAAGCGGTACA
LOC_Os12g02690
Os.27569.3.S1_at--593--3393Chr12:942568..942592 (25 bp)
CAGCTCAGCCCAAGCATTTGTCGAA
LOC_Os12g02690
Os.27569.3.S1_at--960--7054Chr12:942610..942634 (25 bp)
GTCAGTCCAAGGTGTTTATTCGTTA
LOC_Os12g02690
Os.27569.3.S1_at--261--6514Chr12:942647..942671 (25 bp)
GATATCTTGACACCCTTTTGATCTG
LOC_Os12g02690
Os.27569.3.S1_at--576--8853Chr12:942665..942689 (25 bp)
TGATCTGCCCAGGAACAGCATTTTG
LOC_Os12g02690
Os.27569.3.S1_at--174--8254Chr12:942691..942715 (25 bp)
GGCAGTTTTTGGCTACCAATTTCAG
LOC_Os12g02690
Os.27569.3.S1_at--1160--3434Chr12:942713..942737 (25 bp)
CAGTTGCCCTGTGCCAATATGGTAA
LOC_Os12g02690
Os.27569.3.S1_at--456--9652Chr12:942816..942840 (25 bp)
TCAGTCTTCCTTTTGGGTGGGTTAG
LOC_Os12g02690
Os.27569.3.S1_at--39--3891Chr12:942865..942889 (25 bp)
CTGTGACCACGTACCTTTTGTAAGT
LOC_Os12g02690
Target Sequence 
GAAGCTGTGAGACCCCTTCTTCAGAGCCTCTACTTACAGGCATTGCAGACACCTGCCCAGATGCGCCACTGAGGCGACCT
CTTAAAGCGGTACAGCTCAGCCCAAGCATTTGTCGAAAGCTCGACTTTGATTCAGTCAGTCCAAGGTGTTTATTCGTTAA
AGAGAATAAGTGATATCTTGACACCCTTTTGATCTGCCCAGGAACAGCATTTTGGGGCAGTTTTTGGCTACCAATTTCAG
TTGCCCTGTGCCAATATGGTAACTTTGCTAACTGAAACATGTAGGTAGTGATGCTAAAGGAGTAGGAGGCAGTTTAATAA
GTTATACATGTAAGCTTTAATCAGTCTTCCTTTTGGGTGGGTTAGTCATATACAATTAGGAGTTGTGGTCTGTGACCACG
TACCTTTTGTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27569.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis