Browse Element(s) Details


Os.27628.1.S1_at

Description gb:CB620346
DB_XREF= gi:29615334
DB_XREF=OSIIEa05H21.r
CLONE=OSIIEa05H21
TID=Os.27628.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27628 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181919.1 (A.thaliana) putative methyl chloride transferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6267011/11Thiopurine S-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27628.1.S1_at--116--2211Chr03:35407736..35407760 (25 bp)
ACAACAGTGCTCGAGTAAGATCATG
LOC_Os03g62670
Os.27628.1.S1_at--664--331Chr03:35407824..35407848 (25 bp)
ATAAATCCGCTTTCCCATATAGTTA
LOC_Os03g62670
Os.27628.1.S1_at--825--1211Chr03:35407844..35407868 (25 bp)
AGTTATATGTTCCACAGACACGTAA
LOC_Os03g62670
Os.27628.1.S1_at--676--5631Chr03:35407860..35407884 (25 bp)
GACACGTAACTGTTCTCCAGTATAT
LOC_Os03g62670
Os.27628.1.S1_at--242--5591Chr03:35407886..35407910 (25 bp)
GAAATCTGATCACAAGTCTGCTATA
LOC_Os03g62670
Os.27628.1.S1_at--581--1132Chr03:35407900..35407924 (25 bp)
AGTCTGCTATACCATGCATCATGCA
LOC_Os03g62670
Os.27628.1.S1_at--99--2811Chr03:35408519..35408540 (22 bp)
AAGATAGTGGAGGACGCGCGCAAAC
LOC_Os03g62670
Os.27628.1.S1_at--1056--5131Chr03:35408540..35408560 (21 bp)
GCAAACTCCTTGTTCGCAGCATAAT
LOC_Os03g62670
Os.27628.1.S1_at--747--9631Chr03:35408570..35408596 (25 bp)
TCACCCGCACGTCTCTAATAAAAAG
LOC_Os03g62670
Os.27628.1.S1_at--646--10631Chr03:35408632..35408656 (25 bp)
TTCGAGCTTGTGCATCCGTGTAAAT
LOC_Os03g62670
Os.27628.1.S1_at--328--3691Chr03:35408688..35408712 (25 bp)
CTATGCAAAATGTATGGCGTGGCTT
LOC_Os03g62670
Target Sequence 
ACAACAGTGCTCGAGTAAGATCATGCATATTGATCTTTGTACAAATGAAAAATGAAAAAAAAAAAGATGTCACTTGATCA
TCAGAAAAATAAATCCGCTTTCCCATATAGTTATATGTTCCACAGACACGTAACTGTTCTCCAGTATATAGAAATCTGAT
CACAAGTCTGCTATACCATGCATCATGCAGTTACAAGGAGGTGCTGAACCCGTTGGGTTTAGTCATTACTTCTATCGAGG
ACAATGAAGTCGCAGTTGAACCACGAAAGGGGATGGAGAAAATCGCAAGGTGGAAGAGGATGACAAAATCCGACTAATAA
GATAGTGGAGGACGCGCGCAAACTCCTTGTTCGCAGCATAATATGTCTACGTCACCCGCACGTCTCTAATAAAAAGAAGG
AAAGAAGGAAAAATGAATTTAATGGGCCTGATTCGAGCTTGTGCATCCGTGTAAATACATAATATAGTGTAATTATTCTA
TACATCTCTATGCAAAATGTATGGCGTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis