Browse Element(s) Details


Os.27684.1.S1_at

Description gb:AK102882.1
DB_XREF= gi:32988091
TID=Os.27684.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pumilioMpt5 family RNA-binding protein (P0446B05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112I24, full insert sequence.
FL= gb:AK103686.1 gb:AK099801.1 gb:AK102882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6265010/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62630Os.42450.1.A1_at11/111+36594912..36596586Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660Os.10050.1.S1_at11/111+36614131..36616492myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g62670Os.9677.2.S1_x_at11/111+36622963..36625449Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27684.1.S1_at--875--7071Chr01:36609056..36609080 (25 bp)
GTCAACCACGTCAAACCATGGCTAT
LOC_Os01g62650
Os.27684.1.S1_at--940--5191Chr01:36609085..36609109 (25 bp)
GCAATTTGGCTTTTGGCATGGGCAT
LOC_Os01g62650
Os.27684.1.S1_at--839--791Chr01:36609102..36609126 (25 bp)
ATGGGCATGGCATACCCTGGAAGCC
LOC_Os01g62650
Os.27684.1.S1_at--414--8511Chr01:36609119..36609143 (25 bp)
TGGAAGCCCTTTGGGAAGTCCTGTT
LOC_Os01g62650
Os.27684.1.S1_at--178--491Chr01:36609152..36609176 (25 bp)
ATCTGGTCCTGGCAGTCCACTTAGA
LOC_Os01g62650
Os.27684.1.S1_at--783--2511Chr01:36609216..36609240 (25 bp)
AACTTGGGTGGCTGGAATTCTGATC
LOC_Os01g62650
Os.27684.1.S1_at--1127--711Chr01:36609256..36609280 (25 bp)
ATGATAACTTCCCATCTTCACTATT
LOC_Os01g62650
Os.27684.1.S1_at--408--3511NONE
CATGTGGTTGAGTTCAGCGCTGACC
NONE
Os.27684.1.S1_at--1079--4551Chr01:36609938..36609962 (25 bp)
GCGCTGACCAATACGGAAGCCGTTT
LOC_Os01g62650
Os.27684.1.S1_at--834--8071Chr01:36610244..36610268 (25 bp)
GGAGCTGGCTGATCAACTATTTGGA
LOC_Os01g62650
Os.27684.1.S1_at--147--791Chr01:36610270..36610294 (25 bp)
ATGTGTTAGCTCTCAGCCTTCAGAT
LOC_Os01g62650
Target Sequence 
GTCAACCACGTCAAACCATGGCTATTATGGCAATTTGGCTTTTGGCATGGGCATGGCATACCCTGGAAGCCCTTTGGGAA
GTCCTGTTGCTTCTCCATCTGGTCCTGGCAGTCCACTTAGACTCAGTGAGCGGAATATGAGATTTCCTTCTAACTTGAGA
AACTTGGGTGGCTGGAATTCTGATCCAAGTGGCTATATGAATGATAACTTCCCATCTTCACTATTGGATGAATTCAAAAG
TAATAAGGCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGCGCTGACCAATACGGAAGCCGTT
TCATACAGCAAAAACTTGAAACCGCAACAGTTGAGGAAAAAGACATGGTTTTTAAGGAGATCATGCCTCAGGCTCTCTCG
TTGATGACCGATGTATTTGGGAACTACGTGGTGCAGAAGTTCTTTGAGCACGGGAGTGCAGCACAGCGTAGGGAGCTGGC
TGATCAACTATTTGGACATGTGTTAGCTCTCAGCCTTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis