Browse Element(s) Details


Os.27684.1.S2_at

Description gb:AK099801.1
DB_XREF= gi:32985010
TID=Os.27684.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.27684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pumilioMpt5 family RNA-binding protein (P0446B05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098A15, full insert sequence.
FL= gb:AK103686.1 gb:AK099801.1 gb:AK102882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6265011/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62630Os.42450.1.A1_at11/111+36594912..36596586Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660Os.10050.1.S1_at11/111+36614131..36616492myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g62670Os.9677.2.S1_x_at11/111+36622963..36625449Avr9/Cf-9 rapidly elicited protein 137, putative, expressed
LOC_Os01g62680OsAffx.9549.1.S1_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.1.S1_s_at11/111+36627105..36628976hypothetical protein
LOC_Os01g62680OsAffx.9549.2.S1_at10/111+36627105..36628976hypothetical protein
LOC_Os01g62690OsAffx.1034.2.S1_at11/111+36633985..36634734hypothetical protein
LOC_Os01g62700OsAffx.11704.1.S1_at11/111+36638034..36638339hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27684.1.S2_at--895--9651Chr01:36612526..36612550 (25 bp)
TCAGCAGCGTGAGTTGATCCTGTCA
LOC_Os01g62650
Os.27684.1.S2_at--608--5371Chr01:36612595..36612619 (25 bp)
GAAGCACATAGTTGCCCGGGTAGAA
LOC_Os01g62650
Os.27684.1.S2_at--829--2411Chr01:36612618..36612638 (21 bp)
AAAAACTTGTTGCTGCCGGTGAGAG
LOC_Os01g62650
Os.27684.1.S2_at--496--7591Chr01:36612790..36612814 (25 bp)
GGGCTTCAGGCACAATATCCTTCAT
LOC_Os01g62650
Os.27684.1.S2_at--382--2991Chr01:36612832..36612856 (25 bp)
AATGTACAGCTAACCATGGCTAGCC
LOC_Os01g62650
Os.27684.1.S2_at--1150--851Chr01:36612847..36612871 (25 bp)
ATGGCTAGCCAGATCTACCCTGTGT
LOC_Os01g62650
Os.27684.1.S2_at--466--7451Chr01:36612868..36612892 (25 bp)
GTGTCTCCTGCTTTGGGCTGCTACA
LOC_Os01g62650
Os.27684.1.S2_at--720--1331Chr01:36612978..36613002 (25 bp)
AGAGTTTATTTACCTGATGACGCTG
LOC_Os01g62650
Os.27684.1.S2_at--146--5991Chr01:36613072..36613096 (25 bp)
GAGACTGTACAAATCTGCGATCCTG
LOC_Os01g62650
Os.27684.1.S2_at--77--9151Chr01:36613087..36613111 (25 bp)
TGCGATCCTGAGAGAGCTACCAGCT
LOC_Os01g62650
Os.27684.1.S2_at--737--6411Chr01:36613138..36613162 (25 bp)
GATCTCCCATGTTTATCACTGATGA
LOC_Os01g62650
Target Sequence 
TCAGCAGCGTGAGTTGATCCTGTCACGAGTAAAGGTTCATTTAAGTGCACTGAAGAAATATACATATGGGAAGCACATAG
TTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAATGGCATGAA
AATGACAATGTACAGCTAACCATGGCTAGCCAGATCTACCCTGTGTCTCCTGCTTTGGGCTGCTACAAGCCAACTTTAAA
AATAAACGTGTTGTACTAAGAAGATTGTACATTTTGTAGTTTTTGCTTATAGTCATGTCAGGGGTGAGGCTCAGAGTTTA
TTTACCTGATGACGCTGCAGAGAAGATAGGCGTTTTGTATAAGTCGGTTAGGTGTAAAAAGAGGAAGAAAGTCTATATTT
TGCGANGAGACTGTACAAATCTGCGATCCTGAGAGAGCTACCAGCTGTTCCTGTTTAGGATAAGATTTTAATGATCTCCC
ATGTTTATCACTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27684.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis