Browse Element(s) Details


Os.27807.1.S1_a_at

Description gb:D64038.1
DB_XREF= gi:1841319
GEN=EL2
TID=Os.27807.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1384D03.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) mRNA for EL2 gene, complete cds.
FL= gb:D64038.1 gb:AK063743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0174011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01710Os.17650.1.S1_at11/113+418686..425932expressed protein
LOC_Os03g01710Os.17650.1.S2_at11/113+418686..425932expressed protein
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein
LOC_Os03g01730Os.27807.2.S1_a_at11/113+443523..446205expressed protein
LOC_Os03g01740Os.27807.1.S1_a_at11/113+448680..449420expressed protein
LOC_Os03g01740Os.27807.1.S1_at11/113+448680..449420expressed protein
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27807.1.S1_a_at--1007--7771Chr03:448801..448825 (25 bp)
GGTACCAGTACCACGGAGGTCGACG
LOC_Os03g01740
Os.27807.1.S1_a_at--137--1711Chr03:448804..448828 (25 bp)
ACCAGTACCACGGAGGTCGACGAGT
LOC_Os03g01740
Os.27807.1.S1_a_at--1058--1691Chr03:448810..448834 (25 bp)
ACCACGGAGGTCGACGAGTACAGCT
LOC_Os03g01740
Os.27807.1.S1_a_at--636--6151Chr03:448816..448840 (25 bp)
GAGGTCGACGAGTACAGCTGCTGCC
LOC_Os03g01740
Os.27807.1.S1_a_at--319--3491Chr03:448899..448923 (25 bp)
CAGGCCGGTGGCCTGCAGGAAGCTC
LOC_Os03g01740
Os.27807.1.S1_a_at--941--9571Chr03:448925..448949 (25 bp)
TCTTCGACCCAGCTCAGCAGCAGGG
LOC_Os03g01740
Os.27807.1.S1_a_at--156--8211Chr03:448955..448979 (25 bp)
GGAAGGCCATCAGCCTGCGTCTCGA
LOC_Os03g01740
Os.27807.1.S1_a_at--842--391Chr03:448963..448987 (25 bp)
ATCAGCCTGCGTCTCGACGAGCTGG
LOC_Os03g01740
Os.27807.1.S1_a_at--103--1691Chr03:448966..448990 (25 bp)
AGCCTGCGTCTCGACGAGCTGGAGC
LOC_Os03g01740
Os.27807.1.S1_a_at--321--10651Chr03:448996..449020 (25 bp)
TTCCGCCCCATCACCAATAATGCCA
LOC_Os03g01740
Os.27807.1.S1_a_at--380--3091Chr03:449011..449035 (25 bp)
AATAATGCCAACCTTCACCTCCAAA
LOC_Os03g01740
Target Sequence 
GGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGAATCAAGGGAGCCAGCCACCTGCC
CGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAAGGGGAAG
GCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27807.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis