Browse Element(s) Details


Os.27899.1.A1_x_at

Description gb:CB671079
DB_XREF= gi:29674804
DB_XREF=OSJNEe04H16.r
CLONE=OSJNEe04H16
TID=Os.27899.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27899 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g742801/11mce-related family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74250Os.7672.1.S1_at11/111+43343774..43345975uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g74260NANA1+43354520..43360668retrotransposon protein, putative, unclassified
LOC_Os01g74270NANA1+43361296..43364437retrotransposon protein, putative, unclassified
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27899.1.A1_x_at--963--2831NONE
AAGTCATTTAGCAGACTGTGGGGAT
NONE
Os.27899.1.A1_x_at--704--1531NONE
AGCTTTTTCCATTGGGAAGGGCTGA
NONE
Os.27899.1.A1_x_at--795--7571NONE
GGGCTGATACGGGAATTTGCTATTA
NONE
Os.27899.1.A1_x_at--1150--3191NONE
CAAGTTTCCTGCATTCCGGGATATT
NONE
Os.27899.1.A1_x_at--192--8751NONE
TGTAAATTTCCGTTAGTTGTGTGGG
NONE
Os.27899.1.A1_x_at--276--6631NONE
GTTGTGTGGGGCATCTTTTTAATTG
NONE
Os.27899.1.A1_x_at--72--3471NONE
CAGTGTAGGCCGGTTTTGGTTTGAT
NONE
Os.27899.1.A1_x_at--308--4491NONE
GCCGGTTTTGGTTTGATATTGTGAT
NONE
Os.27899.1.A1_x_at--676--8871Chr01:43370718..43370739 (22 bp)
TGATGTTTCATTCTTGTGCCCTCGG
LOC_Os01g74280
Os.27899.1.A1_x_at--496--7271NONE
GTGCCCTCGGGCAAAGGTAACCACA
NONE
Os.27899.1.A1_x_at--518--9151NONE
TGCCCTCGGGCAAAGGTAACCACAA
NONE
Target Sequence 
AAGTCATTTAGCAGACTGTGGGGATTGCTCAGGAATAACCCGGGGGAGCTTTTTCCATTGGGAAGGGCTGATACGGGAAT
TTGCTATTAGTGTAGCATTTCTTGAAAAAAGGAAGAAAATGAGAGGAAAGCGCAGGTTGAGAATGAGATTGGAAAGAGGT
CATTTGGAGAGAGGGGACCCAATTTTTTGAATAGTGGAATTATAGTTTGTGGTTTTTTTTTCCAAGTTTCCTGCATTCCG
GGATATTATTAAAACAAGAAAAGCCCGGGGAAAAGTGTAAATTTCCGTTAGTTGTGTGGGGCATCTTTTTAATTGGTTTT
GGTTTTTTTTTTTGGGAGGCAGTGTAGGCCGGTTTTGGTTTGATATTGTGATGTTTCATTCTTGTGCCCTCGGGCAAAGG
TAACCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27899.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis