Browse Element(s) Details

Os.27920.1.A1_at

Description

gb:AK107157.1
DB_XREF= gi:32992366
TID=Os.27920.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alcohol dehydrogenase-like protein (P0453E03.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E09, full insert sequence.
FL= gb:AK107157.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g46840	11/11	NAD dependent epimerase/dehydratase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g46810	OsAffx.16738.1.S1_at	11/11	7	+	27980212..27981050	expressed protein
LOC_Os07g46820	Os.34737.2.S1_x_at	11/11	7	+	27981530..27986262	RNA recognition motif family protein, expressed
LOC_Os07g46830	OsAffx.22529.1.S1_s_at	11/11	7	+	27989502..27990897	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840	Os.27920.1.A1_at	11/11	7	+	27994153..27995532	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840	OsAffx.22529.1.S1_s_at	1/11	7	+	27994153..27995532	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846	Os.28282.2.S1_s_at	11/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	Os.28282.1.S1_at	11/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	Os.28282.2.S1_x_at	11/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	Os.7935.2.S1_x_at	4/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	OsAffx.28936.1.S1_x_at	1/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.7935.1.S1_x_at	11/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.7935.1.S1_at	11/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.7935.2.S1_x_at	11/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.28282.2.S1_x_at	4/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.28936.1.S1_at	11/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.28936.1.S1_x_at	11/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	Os.7935.2.S1_x_at	1/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.31756.5.S1_x_at	1/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46870	OsAffx.31756.5.S1_x_at	11/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.53426.1.S1_at	4/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.28282.2.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.7935.2.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	OsAffx.31756.3.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016491	molecular_function	oxidoreductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27920.1.A1_at--1050--847	1	Chr07:27995071..27995095 (25 bp)	TGGCGGTCCCGCACTACAGCGTGTC	LOC_Os07g46840
Os.27920.1.A1_at--951--253	1	Chr07:27995178..27995202 (25 bp)	AACTACATCTGGACGCCCATGGCGG	LOC_Os07g46840
Os.27920.1.A1_at--440--1059	1	Chr07:27995211..27995235 (25 bp)	TTCGCAAGGTGGTACCCCAGCCGGA	LOC_Os07g46840
Os.27920.1.A1_at--754--421	1	Chr07:27995249..27995273 (25 bp)	CCGCCGGATCGTGGAGAATGACATA	LOC_Os07g46840
Os.27920.1.A1_at--1140--981	1	Chr07:27995272..27995296 (25 bp)	TAAACGAGATGGATGGCGTGACACT	LOC_Os07g46840
Os.27920.1.A1_at--192--327	1	Chr07:27995408..27995432 (25 bp)	CAACATGCCGGTCCCAGATGGCCAT	LOC_Os07g46840
Os.27920.1.A1_at--323--623	1	Chr07:27995424..27995448 (25 bp)	GATGGCCATTGATAATGTACCACGG	LOC_Os07g46840
Os.27920.1.A1_at--631--875	1	Chr07:27995439..27995463 (25 bp)	TGTACCACGGTTGATGAATAATAAT	LOC_Os07g46840
Os.27920.1.A1_at--596--699	1	Chr07:27995475..27995499 (25 bp)	GTACACAATTCGTAGTATTAACTCT	LOC_Os07g46840
Os.27920.1.A1_at--167--1019	1	Chr07:27995490..27995514 (25 bp)	TATTAACTCTGTTTCATACTGTAAG	LOC_Os07g46840
Os.27920.1.A1_at--237--993	1	Chr07:27995506..27995530 (25 bp)	TACTGTAAGTTCGTTTGGACTCTTT	LOC_Os07g46840

Target Sequence

TGGCGGTCCCGCACTACAGCGTGTCCAAGGCCGCGGTGCTCGGGCTGGTGCGCGCCGTGGCGGGCGAGATGGCGCGCTCC
GGCGTGCGCGTGAACGCCATCTCCCCCAACTACATCTGGACGCCCATGGCGGCGGTCGCCTTCGCAAGGTGGTACCCCAG
CCGGAGCGCCGACGACCACCGCCGGATCGTGGAGAATGACATAAACGAGATGGATGGCGTGACACTGGAGGCCGAGGACG
TGGCAAGGGCGGCGGTGTTCCTCGCCTCCGACGAGGCTAAGTACGTGAACGGGCACAACCTCGTTGTCGACGGCGGGTAC
ACCGTCGGCAAGGTGCCCAACATGCCGGTCCCAGATGGCCATTGATAATGTACCACGGTTGATGAATAATAATGTTGTTG
ATGTGTACACAATTCGTAGTATTAACTCTGTTTCATACTGTAAGTTCGTTTGGACTCTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis