Browse Element(s) Details


Os.27974.1.S1_at

Description gb:AK121555.1
DB_XREF= gi:37991178
TID=Os.27974.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435B05.29 (P0435B05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033I01, full insert sequence.
FL= gb:AK121555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5500011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed
LOC_Os01g55040Os.24889.1.S1_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55040Os.24889.2.S1_x_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55050Os.21824.1.S1_at11/111+31978464..31983284expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27974.1.S1_at--375--6991Chr01:31957094..31957118 (25 bp)
GTACGCGAACGGCAACTATCAGGAG
LOC_Os01g55000
Os.27974.1.S1_at--690--2571Chr01:31957197..31957221 (25 bp)
AACGGCAACGATCACGAGGAGTTTG
LOC_Os01g55000
Os.27974.1.S1_at--471--3191Chr01:31957265..31957289 (25 bp)
CAATGCGGCGGCAGGGTACTACGAC
LOC_Os01g55000
Os.27974.1.S1_at--535--3451Chr01:31957276..31957300 (25 bp)
CAGGGTACTACGACGCGAACGGGCA
LOC_Os01g55000
Os.27974.1.S1_at--532--5451Chr01:31957292..31957316 (25 bp)
GAACGGGCAGTACATTCCATGAGTA
LOC_Os01g55000
Os.27974.1.S1_at--640--2991Chr01:31957321..31957345 (25 bp)
AATGATGTTATACTGCGAAGCGTTT
LOC_Os01g55000
Os.27974.1.S1_at--290--1091Chr01:31957353..31957377 (25 bp)
AGTGGTAGTATACTCGCGTTCACCT
LOC_Os01g55000
Os.27974.1.S1_at--397--10511Chr01:31957371..31957395 (25 bp)
TTCACCTCCTTGTGTGCTGGAAGTA
LOC_Os01g55000
Os.27974.1.S1_at--260--7991Chr01:31957479..31957503 (25 bp)
GGATGAATCACTTTTGTCGGATAAC
LOC_Os01g55000
Os.27974.1.S1_at--364--7531Chr01:31957506..31957530 (25 bp)
GTGGAATGTACTCGTCTCACTGTAC
LOC_Os01g55000
Os.27974.1.S1_at--377--4991Chr01:31957541..31957565 (25 bp)
GCATGCTACAGTACTATATGTCACT
LOC_Os01g55000
Target Sequence 
GTACGCGAACGGCAACTATCAGGAGGAGTTCGGCGTCGGCCACCGTGCCGGCGAGCAGGTGAGGAGGTATGGCAATGGCA
ATGTGGCCGGGCNAGAGTACGNAAACGGCAACGATCACGAGGAGTTTGGCATCGGGCAGCGCGCCGGCGTGCAGACGGGG
AGGAGGTATGACAATGCGGCGGCAGGGTACTACGACGCGAACGGGCAGTACATTCCATGAGTANNNTCTCAATGATGTTA
TACTGCGAAGCGTTTGTAGTACAGTGGTAGTATACTCGCGTTCACCTCCTTGTGTGCTGGAAGTAAGTTATGTTANNTTA
CTTCGAAGGNNGATCGAGCTGGTCGCTCGCCCGCTCTCGTACGTGCGCTTGTNTNNGGGGTGNNNTTGANGGGATGAATC
ACTTTTGTCGGATAACTAGTGGAATGTACTCGTCTCACTGTACAAGAAATAATGCATGCTACAGTACTATATGTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis