Browse Element(s) Details


Os.27981.1.S1_at

Description gb:AK071076.1
DB_XREF= gi:32981099
TID=Os.27981.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078H22, full insert sequence.
FL= gb:AK071076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5970010/11Peptidyl-prolyl cis-trans isomerase H, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59660Os.53298.1.S1_at11/113+33908054..33910453Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g59670OsAffx.13553.1.S1_at11/113+33912599..33914507Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59720Os.27962.1.A1_at11/113+33939999..33941322ribosomal protein L36 containing protein, expressed
LOC_Os03g59730OsAffx.25773.1.S1_at10/113+33941973..33944596No apical meristem protein
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005829cellular_componentcytosol
GO:0009570cellular_componentchloroplast stroma
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27981.1.S1_at--889--10731Chr03:33936326..33936350 (25 bp)
TTGCAAAGCATACTGGTCCTGGCCT
LOC_Os03g59700
Os.27981.1.S1_at--811--7251Chr03:33936315..33936335 (21 bp)
GTCCTGGCCTACTTTCTATGGCAAA
LOC_Os03g59700
Os.27981.1.S1_at--559--7711NONE
GGGTGAACTCTAATGGATCTCAGTT
NONE
Os.27981.1.S1_at--161--6911Chr03:33934995..33935019 (25 bp)
GTATGCTTGCTGTGCGGAAGATCGA
LOC_Os03g59700
Os.27981.1.S1_at--94--5831Chr03:33934944..33934968 (25 bp)
GACCGAAGCTCGCATGTGTCATAAG
LOC_Os03g59700
Os.27981.1.S1_at--617--3691Chr03:33934882..33934906 (25 bp)
CTATTCTTGGTGCTGCTGATGTAGA
LOC_Os03g59700
Os.27981.1.S1_at--58--1751Chr03:33934782..33934806 (25 bp)
ACCTTGAATGAGTGTCTGTCTATAC
LOC_Os03g59700
Os.27981.1.S1_at--931--6313Chr01:9492804..9492824 (21 bp)
GATGAAAGTTCATCCTCACTTCGTC
NONE
Os.27981.1.S1_at--591--7471Chr03:33934676..33934700 (25 bp)
GTGTGTCTGTTCGACTTGAACCTTC
LOC_Os03g59700
Os.27981.1.S1_at--532--5431Chr03:33934659..33934683 (25 bp)
GAACCTTCGTCATGTCAAGTGGAGC
LOC_Os03g59700
Os.27981.1.S1_at--117--6311Chr03:33934599..33934623 (25 bp)
GATGAGTCGATCTGTGGTTGCACCC
LOC_Os03g59700
Target Sequence 
TTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACT
TGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAA
GATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTAGTTTG
NTACCNTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAA
GCACCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCT
CACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTG
AACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGTGGTTGC
ACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis